Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012281.1 Corchorus capsularis cultivar CVL-1 contig12302, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2020
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35


Found at i:182 original size:58 final size:58

Alignment explanation


    Indices: 92--201  Score: 184
    Period size: 58  Copynumber: 1.9  Consensus size: 58

         82 TTTTGGCCAT

                                                **                    
         92 AAGTTATCGGATTGATATTAATCTTGGAACGTAAAGGGAGGGGAGAAAAAAAAAGTTG
          1 AAGTTATCGGATTGATATTAATCTTGGAACGTAAAGAAAGGGGAGAAAAAAAAAGTTG

                   *                 *                          
        150 AAGTTATTGGATTGATATTAATCTTTGAACGTAAAGAAAGGGGAGAAAAAAA
          1 AAGTTATCGGATTGATATTAATCTTGGAACGTAAAGAAAGGGGAGAAAAAAA

        202 GTTTGACCTT


Statistics
Matches: 48,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  58   48  1.00

ACGTcount: A:0.44, C:0.05, G:0.26, T:0.25


Consensus pattern (58 bp):   
AAGTTATCGGATTGATATTAATCTTGGAACGTAAAGAAAGGGGAGAAAAAAAAAGTTG

Found at i:356 original size:2 final size:2

Alignment explanation


    Indices: 349--374  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

        339 GAATATGAGC

                                                  
        349 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

        375 TCTATAGCTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.