Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012287.1 Corchorus capsularis cultivar CVL-1 contig12308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52259

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1995--2019
13
1.9
13
100
0
50
84
0
16
0
0.63
4880--4939
30
2.0
30
100
0
120
36
20
13
30
1.90
6433--6498
31
2.1
31
91
5
107
28
16
3
51
1.59
6596--6679
38
2.2
36
84
14
100
11
17
13
57
1.65
6814--6856
19
2.1
21
84
16
56
27
6
2
62
1.33
7023--7109
44
2.0
43
82
6
104
35
10
18
35
1.85
7022--7159
22
6.2
22
73
11
93
31
8
20
39
1.83
7245--7571
22
14.6
22
68
10
101
40
10
14
34
1.80
7612--8102
22
22.8
22
67
17
113
38
10
15
35
1.81
7678--7799
66
1.9
64
84
6
165
40
10
13
35
1.80
7670--7835
66
2.5
64
76
9
158
42
9
15
33
1.79
7677--8178
44
11.5
44
69
11
221
38
10
15
35
1.82
7864--7970
45
2.4
44
80
13
128
40
8
14
37
1.76
7609--7988
22
17.8
21
70
14
136
40
9
15
34
1.79
29277--29340
31
2.1
31
82
5
78
54
12
10
21
1.68
30026--30071
24
1.9
24
82
8
58
45
19
6
28
1.75
31899--31944
24
1.9
24
82
8
58
45
19
6
28
1.75
36426--36492
26
2.5
28
80
4
84
65
8
10
14
1.46
40028--40064
2
19.0
2
84
15
51
48
0
2
48
1.15
40947--41021
16
4.8
16
81
3
80
41
38
12
8
1.72
40947--41021
31
2.4
31
84
6
89
41
38
12
8
1.72
41316--41357
19
2.0
20
82
13
50
52
7
4
35
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42347--42384
15
2.4
17
87
12
55
36
39
15
7
1.77
50985--51038
18
3.0
18
94
0
90
27
14
31
25
1.95

Tables:   1

The End!