Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012291.1 Corchorus capsularis cultivar CVL-1 contig12312, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13553
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30


Found at i:606 original size:14 final size:15

Alignment explanation


    Indices: 575--608  Score: 52
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        565 AATCTATTCA

                   *       
        575 AATATTCTACAGGAT
          1 AATATTCAACAGGAT

                           
        590 AATATTCAACA-GAT
          1 AATATTCAACAGGAT

                 
        604 AATAT
          1 AATAT

        609 GAGTGTTGCT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  14    8  0.44
  15   10  0.56

ACGTcount: A:0.47, C:0.12, G:0.09, T:0.32


Consensus pattern (15 bp):   
AATATTCAACAGGAT
Done.