Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012292.1 Corchorus capsularis cultivar CVL-1 contig12313, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8283
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34


Found at i:163 original size:2 final size:2

Alignment explanation


    Indices: 156--185  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        146 TGCACGTGAC

                                                        
        156 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        186 GATTAACAAG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:256 original size:2 final size:2

Alignment explanation


    Indices: 249--280  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

        239 AAAACTGTGA

                                                           
        249 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        281 GTGCATATTT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.