Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012305.1 Corchorus capsularis cultivar CVL-1 contig12326, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6774
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:3596 original size:19 final size:18

Alignment explanation


    Indices: 3572--3608  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

       3562 TTGAAGATTT

                               
       3572 CTTGAAGACAATTTGAAGA
          1 CTTGAAGACAA-TTGAAGA

                     *        
       3591 CTTGAAGACCATTGAAGA
          1 CTTGAAGACAATTGAAGA

       3609 ATTATTGCAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    7  0.41
  19   10  0.59

ACGTcount: A:0.41, C:0.14, G:0.22, T:0.24


Consensus pattern (18 bp):   
CTTGAAGACAATTGAAGA
Done.