Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012311.1 Corchorus capsularis cultivar CVL-1 contig12332, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9692

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2729--2819
16
5.8
16
74
14
73
9
25
30
34
1.88
2770--2831
32
1.9
32
83
6
81
14
29
25
30
1.95
3678--3750
16
4.7
15
79
17
78
9
20
38
31
1.85
3678--3758
32
2.6
31
86
5
119
9
20
38
30
1.86
4955--5002
25
1.9
25
91
0
78
31
14
10
43
1.79
4980--5052
35
2.1
35
89
0
110
24
10
12
52
1.71
5317--5370
28
1.9
28
85
7
74
24
9
7
59
1.54
5348--5424
33
2.4
30
77
14
75
32
7
3
55
1.47
5525--5560
18
1.9
19
88
5
56
30
11
5
52
1.59
6610--6640
2
15.5
2
100
0
62
51
0
0
48
1.00
6890--7042
76
2.0
76
93
0
261
32
26
10
30
1.90

Tables:   1

The End!