Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01012314.1 Corchorus capsularis cultivar CVL-1 contig12335, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22390
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Found at i:6203 original size:14 final size:14
Alignment explanation
Indices: 6184--6308 Score: 80
Period size: 14 Copynumber: 8.6 Consensus size: 14
6174 TGAAGGAGGC
6184 ATTGAAGAATTGAA
1 ATTGAAGAATTGAA
*
6198 ATTGAA-ACGTTGAA
1 ATTGAAGA-ATTGAA
*
6212 ATGGAAGAATTGAA
1 ATTGAAGAATTGAA
6226 ATTGAAGAATTGACA
1 ATTGAAGAATTGA-A
*
6241 TGTTG-A-AATTGAAA
1 -ATTGAAGAATTG-AA
*
6255 CATTG--GCATTTGGAA
1 -ATTGAAG-AATT-GAA
* *
6270 TTTGAAGTATTGAA
1 ATTGAAGAATTGAA
6284 ATTGAAGAATTGAAGA
1 ATTGAAGAATTG-A-A
6300 ATTGAAGAA
1 ATTGAAGAA
6309 AGATCACCCT
Statistics
Matches: 86, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
13 1 0.01
14 58 0.67
15 12 0.14
16 15 0.17
ACGTcount: A:0.44, C:0.03, G:0.23, T:0.30
Consensus pattern (14 bp):
ATTGAAGAATTGAA
Found at i:6246 original size:22 final size:21
Alignment explanation
Indices: 6221--6304 Score: 73
Period size: 22 Copynumber: 3.9 Consensus size: 21
6211 AATGGAAGAA
6221 TTGAAATTGAAGAATTGACAT
1 TTGAAATTGAAGAATTGACAT
*
6242 GTTGAAATTGAA-ACATTGGCAT
1 -TTGAAATTGAAGA-ATTGACAT
* * *
6264 TTGGAATTTGAAGTATTGA-AA
1 TT-GAAATTGAAGAATTGACAT
6285 TTGAAGAATTGAAGAATTGA
1 TTG-A-AATTGAAGAATTGA
6305 AGAAAGATCA
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
20 1 0.02
21 7 0.14
22 42 0.84
ACGTcount: A:0.40, C:0.04, G:0.23, T:0.33
Consensus pattern (21 bp):
TTGAAATTGAAGAATTGACAT
Found at i:6294 original size:8 final size:8
Alignment explanation
Indices: 6271--6308 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
6261 CATTTGGAAT
*
6271 TTGAAGTA
1 TTGAAGAA
6279 TTG-A-AA
1 TTGAAGAA
6285 TTGAAGAA
1 TTGAAGAA
6293 TTGAAGAA
1 TTGAAGAA
6301 TTGAAGAA
1 TTGAAGAA
6309 AGATCACCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
6 4 0.15
7 2 0.07
8 21 0.78
ACGTcount: A:0.47, C:0.00, G:0.24, T:0.29
Consensus pattern (8 bp):
TTGAAGAA
Found at i:6446 original size:8 final size:8
Alignment explanation
Indices: 6430--6483 Score: 55
Period size: 8 Copynumber: 7.2 Consensus size: 8
6420 AATTGAAATC
6430 GAAACATT
1 GAAACATT
*
6438 GAAATATT
1 GAAACATT
6446 GAAAC--T
1 GAAACATT
6452 GAAACATT
1 GAAACATT
6460 GAAGA-ATT
1 GAA-ACATT
6468 G-AA-ATT
1 GAAACATT
6474 GAAACATT
1 GAAACATT
6482 GA
1 GA
6484 TGGGTTGAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
6 11 0.28
7 3 0.08
8 24 0.62
9 1 0.03
ACGTcount: A:0.50, C:0.07, G:0.17, T:0.26
Consensus pattern (8 bp):
GAAACATT
Found at i:6498 original size:22 final size:22
Alignment explanation
Indices: 6347--6483 Score: 120
Period size: 22 Copynumber: 6.2 Consensus size: 22
6337 AGAGTAGAAT
* *
6347 TTGAAGAATTGAAACTGAAGCA
1 TTGAAGAATTGAAATTGAAACA
6369 TTG--GAATGTTGAAATTGAAACA
1 TTGAAGAA--TTGAAATTGAAACA
* * * *
6391 TTGAAGGATCGAACTGGAAGA-A
1 TTGAAGAATTGAAATTGAA-ACA
* *
6413 CTGAAAGAATTGAAATCGAAACA
1 TTG-AAGAATTGAAATTGAAACA
*
6436 TTGAA-ATATTGAAACTGAAACA
1 TTGAAGA-ATTGAAATTGAAACA
6458 TTGAAGAATTGAAATTGAAACA
1 TTGAAGAATTGAAATTGAAACA
6480 TTGA
1 TTGA
6484 TGGGTTGAAT
Statistics
Matches: 91, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
20 3 0.03
21 1 0.01
22 68 0.75
23 17 0.19
24 2 0.02
ACGTcount: A:0.46, C:0.08, G:0.21, T:0.25
Consensus pattern (22 bp):
TTGAAGAATTGAAATTGAAACA
Found at i:6498 original size:36 final size:36
Alignment explanation
Indices: 6458--6597 Score: 127
Period size: 36 Copynumber: 3.7 Consensus size: 36
6448 AACTGAAACA
*
6458 TTGAAGAATTGAAATTGAAACATTGATGGGTTGAAT
1 TTGAAGAATTGAAATTGAAACATTGATGGATTGAAT
* * *
6494 TTGAAGGATTGAAATTGAAGCATTGAACGATTGAATTTGAAT
1 TTGAAGAATTGAAATTGAAACATT----GA-TGGA-TTGAAT
* * * * * *
6536 TTGAAGAATAGGAATAGAAATATCGAAGGATTGAAT
1 TTGAAGAATTGAAATTGAAACATTGATGGATTGAAT
*
6572 TTGAAGAATTGAAATTGAAGCATTGA
1 TTGAAGAATTGAAATTGAAACATTGA
6598 AACATTGAAG
Statistics
Matches: 79, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
36 48 0.61
37 2 0.03
38 2 0.03
40 2 0.03
41 2 0.03
42 23 0.29
ACGTcount: A:0.41, C:0.04, G:0.24, T:0.31
Consensus pattern (36 bp):
TTGAAGAATTGAAATTGAAACATTGATGGATTGAAT
Found at i:6519 original size:22 final size:22
Alignment explanation
Indices: 6494--6743 Score: 185
Period size: 22 Copynumber: 11.5 Consensus size: 22
6484 TGGGTTGAAT
*
6494 TTGAAGGATTGAAATTGAAGCA
1 TTGAAGAATTGAAATTGAAGCA
* *
6516 TTGAACG-ATTGAATTTGAA--T
1 TTGAA-GAATTGAAATTGAAGCA
* * * **
6536 TTGAAGAATAGGAATAGAAATA
1 TTGAAGAATTGAAATTGAAGCA
* * * *
6558 TCGAAGGATTGAATTTGAAGAA
1 TTGAAGAATTGAAATTGAAGCA
*
6580 TTG-A-AATTGAAGCATTGAAACA
1 TTGAAGAATTGAA--ATTGAAGCA
* *
6602 TTGAAGAATTGAACTTGAAACA
1 TTGAAGAATTGAAATTGAAGCA
*
6624 TTGAA-ATACTGAAATTGAAGCA
1 TTGAAGA-ATTGAAATTGAAGCA
*
6646 TTGAA-ATATTGAAACTGAAGCA
1 TTGAAGA-ATTGAAATTGAAGCA
* *
6668 TTAAAGAATTGAAA--GAAACA
1 TTGAAGAATTGAAATTGAAGCA
6688 TTGAAGAATTGAAATTGAAGCA
1 TTGAAGAATTGAAATTGAAGCA
* * *
6710 TTGAAGATTTGGAATTGACGCA
1 TTGAAGAATTGAAATTGAAGCA
*
6732 TTGAATAATTGA
1 TTGAAGAATTGA
6744 GGAACGAAAG
Statistics
Matches: 180, Mismatches: 36, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
19 1 0.01
20 37 0.21
21 2 0.01
22 130 0.72
23 3 0.02
24 7 0.04
ACGTcount: A:0.44, C:0.06, G:0.21, T:0.28
Consensus pattern (22 bp):
TTGAAGAATTGAAATTGAAGCA
Found at i:6582 original size:14 final size:14
Alignment explanation
Indices: 6560--6714 Score: 81
Period size: 14 Copynumber: 10.8 Consensus size: 14
6550 TAGAAATATC
* *
6560 GAAGGATTGAATTT
1 GAAGAATTGAAATT
6574 GAAGAATTGAAATT
1 GAAGAATTGAAATT
*
6588 GAAGCATTGAAACATT
1 GAAGAATTG-AA-ATT
*
6604 GAAGAATTGAACTT
1 GAAGAATTGAAATT
6618 GAA-ACATTGAAATACT
1 GAAGA-ATTGAAAT--T
6634 G-A-AATTGAAGCATT
1 GAAGAATTGAA--ATT
*
6648 GAA-ATATTGAAACT
1 GAAGA-ATTGAAATT
* *
6662 GAAGCATTAAAGAATT
1 GAAGAATT-GA-AATT
*
6678 GAAAGAA---ACATT
1 G-AAGAATTGAAATT
6690 GAAGAATTGAAATT
1 GAAGAATTGAAATT
*
6704 GAAGCATTGAA
1 GAAGAATTGAA
6715 GATTTGGAAT
Statistics
Matches: 111, Mismatches: 14, Indels: 32
0.71 0.09 0.20
Matches are distributed among these distances:
11 5 0.05
12 4 0.04
13 2 0.02
14 62 0.56
15 9 0.08
16 25 0.23
17 4 0.04
ACGTcount: A:0.47, C:0.06, G:0.20, T:0.26
Consensus pattern (14 bp):
GAAGAATTGAAATT
Found at i:6586 original size:30 final size:30
Alignment explanation
Indices: 6572--6714 Score: 122
Period size: 30 Copynumber: 4.9 Consensus size: 30
6562 AGGATTGAAT
6572 TTGAAGAATTGAAATTGAAGCATTGAAACA
1 TTGAAGAATTGAAATTGAAGCATTGAAACA
* * *
6602 TTGAAGAATTGAACTTGAAACATTGAAATA
1 TTGAAGAATTGAAATTGAAGCATTGAAACA
* **
6632 CTG-A-AATTGAAGCATTGAAATATTGAAAC-
1 TTGAAGAATTGAA--ATTGAAGCATTGAAACA
* *
6661 -TGAAGCATTAAAGAATTGAA--A--GAAACA
1 TTGAAGAATT-GA-AATTGAAGCATTGAAACA
6688 TTGAAGAATTGAAATTGAAGCATTGAA
1 TTGAAGAATTGAAATTGAAGCATTGAA
6715 GATTTGGAAT
Statistics
Matches: 90, Mismatches: 11, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
26 12 0.13
27 1 0.01
28 19 0.21
29 2 0.02
30 54 0.60
31 1 0.01
32 1 0.01
ACGTcount: A:0.48, C:0.07, G:0.19, T:0.27
Consensus pattern (30 bp):
TTGAAGAATTGAAATTGAAGCATTGAAACA
Found at i:6596 original size:8 final size:8
Alignment explanation
Indices: 6572--6715 Score: 65
Period size: 8 Copynumber: 18.8 Consensus size: 8
6562 AGGATTGAAT
*
6572 TTGAAGAA
1 TTGAAGCA
6580 TTGAA--A
1 TTGAAGCA
6586 TTGAAGCA
1 TTGAAGCA
*
6594 TTGAAACA
1 TTGAAGCA
*
6602 TTGAAGAA
1 TTGAAGCA
6610 TTGAA-C-
1 TTGAAGCA
*
6616 TTGAAACA
1 TTGAAGCA
**
6624 TTGAAATA
1 TTGAAGCA
*
6632 CTGAA--A
1 TTGAAGCA
6638 TTGAAGCA
1 TTGAAGCA
**
6646 TTGAAATA
1 TTGAAGCA
6654 TTGAA--A
1 TTGAAGCA
*
6660 CTGAAGCA
1 TTGAAGCA
* *
6668 TTAAAGAA
1 TTGAAGCA
6676 TTGAAAGAAACA
1 TTG-AAG---CA
*
6688 TTGAAGAA
1 TTGAAGCA
6696 TTGAA--A
1 TTGAAGCA
6702 TTGAAGCA
1 TTGAAGCA
6710 TTGAAG
1 TTGAAG
6716 ATTTGGAATT
Statistics
Matches: 106, Mismatches: 16, Indels: 28
0.71 0.11 0.19
Matches are distributed among these distances:
6 27 0.25
7 1 0.01
8 68 0.64
9 3 0.03
11 3 0.03
12 4 0.04
ACGTcount: A:0.47, C:0.07, G:0.19, T:0.26
Consensus pattern (8 bp):
TTGAAGCA
Found at i:6859 original size:16 final size:17
Alignment explanation
Indices: 6828--6867 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
6818 CACCTTGGGT
6828 CATTGAAGTGAATTGAAG
1 CATTG-AGTGAATTGAAG
6846 CATTGAGT-AATTGAAG
1 CATTGAGTGAATTGAAG
*
6862 AATTGA
1 CATTGA
6868 AGCAATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 13 0.62
17 3 0.14
18 5 0.24
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (17 bp):
CATTGAGTGAATTGAAG
Found at i:6860 original size:58 final size:59
Alignment explanation
Indices: 6721--6863 Score: 182
Period size: 58 Copynumber: 2.5 Consensus size: 59
6711 TGAAGATTTG
* * * *
6721 GAATTGACGCATTGAATAATTG-AGGAACGAAAGAAAGACCATCACGTATCATTGAAGC
1 GAATTGAAGCATTGAATAATTGAAGAAACGAAAGAAAGACCACCACGGATCATTGAAGC
* ** * *
6779 AAATTGAAGCATTGAATAATTGAAGAAACG-AAGAAAGACCACCTTGGGTCATTGAAGT
1 GAATTGAAGCATTGAATAATTGAAGAAACGAAAGAAAGACCACCACGGATCATTGAAGC
*
6837 GAATTGAAGCATTGAGTAATTGAAGAA
1 GAATTGAAGCATTGAATAATTGAAGAA
6864 TTGAAGCAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
58 67 0.92
59 6 0.08
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.22
Consensus pattern (59 bp):
GAATTGAAGCATTGAATAATTGAAGAAACGAAAGAAAGACCACCACGGATCATTGAAGC
Found at i:6865 original size:8 final size:8
Alignment explanation
Indices: 6837--6923 Score: 58
Period size: 8 Copynumber: 11.2 Consensus size: 8
6827 TCATTGAAGT
6837 GAATTGAA
1 GAATTGAA
*
6845 GCATTG-A
1 GAATTGAA
6852 GTAATTGAA
1 G-AATTGAA
6861 GAATTGAA
1 GAATTGAA
*
6869 GCAA-TAAA
1 G-AATTGAA
*
6877 TAATTGAA
1 GAATTGAA
*
6885 GAAAT--A
1 GAATTGAA
6891 -AATTGAA
1 GAATTGAA
*
6898 GTATTGAA
1 GAATTGAA
6906 GAATTGAA
1 GAATTGAA
* *
6914 TAATTAAA
1 GAATTGAA
6922 GA
1 GA
6924 GTCGAAGAGA
Statistics
Matches: 59, Mismatches: 13, Indels: 14
0.69 0.15 0.16
Matches are distributed among these distances:
5 3 0.05
6 1 0.02
7 5 0.08
8 46 0.78
9 4 0.07
ACGTcount: A:0.51, C:0.02, G:0.20, T:0.28
Consensus pattern (8 bp):
GAATTGAA
Found at i:6867 original size:24 final size:24
Alignment explanation
Indices: 6837--6913 Score: 81
Period size: 24 Copynumber: 3.3 Consensus size: 24
6827 TCATTGAAGT
6837 GAATTGAAGCATTGAGTAATTGAA
1 GAATTGAAGCATTGAGTAATTGAA
* * *
6861 GAATTGAAGCAATAAATAATTGAA
1 GAATTGAAGCATTGAGTAATTGAA
*
6885 GAAAT-AA--ATTGAAGT-ATTGAA
1 GAATTGAAGCATTG-AGTAATTGAA
6906 GAATTGAA
1 GAATTGAA
6914 TAATTAAAGA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
21 12 0.28
22 4 0.09
23 2 0.05
24 25 0.58
ACGTcount: A:0.49, C:0.03, G:0.21, T:0.27
Consensus pattern (24 bp):
GAATTGAAGCATTGAGTAATTGAA
Found at i:6931 original size:45 final size:45
Alignment explanation
Indices: 6847--6999 Score: 146
Period size: 45 Copynumber: 3.6 Consensus size: 45
6837 GAATTGAAGC
* * * * *
6847 ATTG-AGTAATTGAAGAATTGAAGCAA-TAAATAATTGAAGAAATAA
1 ATTGAAGT-ATTGAAGAATTGAA-TAATTAAAGAGTCGAAGAGATAA
6892 ATTGAAGTATTGAAGAATTGAATAATTAAAGAGTCGAAGAGATAA
1 ATTGAAGTATTGAAGAATTGAATAATTAAAGAGTCGAAGAGATAA
* * *
6937 ACTGAAG---T---G--TTGAATAGTTAAAGTGTCGAAGAGATAA
1 ATTGAAGTATTGAAGAATTGAATAATTAAAGAGTCGAAGAGATAA
6974 ATTGAAGTATTGAAGAATTGAATAAT
1 ATTGAAGTATTGAAGAATTGAATAAT
7000 GGAAGATTTG
Statistics
Matches: 88, Mismatches: 10, Indels: 20
0.75 0.08 0.17
Matches are distributed among these distances:
37 32 0.36
39 1 0.01
40 1 0.01
42 1 0.01
43 1 0.01
44 2 0.02
45 47 0.53
46 3 0.03
ACGTcount: A:0.48, C:0.03, G:0.22, T:0.28
Consensus pattern (45 bp):
ATTGAAGTATTGAAGAATTGAATAATTAAAGAGTCGAAGAGATAA
Found at i:6943 original size:37 final size:37
Alignment explanation
Indices: 6902--6992 Score: 128
Period size: 37 Copynumber: 2.5 Consensus size: 37
6892 ATTGAAGTAT
*
6902 TGAAGAATTGAATAATTAAAGAGTCGAAGAGATAAAC
1 TGAAGTATTGAATAATTAAAGAGTCGAAGAGATAAAC
* * * *
6939 TGAAGTGTTGAATAGTTAAAGTGTCGAAGAGATAAAT
1 TGAAGTATTGAATAATTAAAGAGTCGAAGAGATAAAC
*
6976 TGAAGTATTGAAGAATT
1 TGAAGTATTGAATAATT
6993 GAATAATGGA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.45, C:0.03, G:0.24, T:0.27
Consensus pattern (37 bp):
TGAAGTATTGAATAATTAAAGAGTCGAAGAGATAAAC
Found at i:6987 original size:8 final size:8
Alignment explanation
Indices: 6973--7030 Score: 53
Period size: 8 Copynumber: 7.2 Consensus size: 8
6963 CGAAGAGATA
6973 AATTGAAG
1 AATTGAAG
*
6981 TATTGAAG
1 AATTGAAG
*
6989 AATTGAAT
1 AATTGAAG
*
6997 AATGGAAG
1 AATTGAAG
*
7005 ATTTGAAG
1 AATTGAAG
* *
7013 CATTGAAT
1 AATTGAAG
*
7021 AGTTGAAG
1 AATTGAAG
7029 AA
1 AA
7031 AGAGATTATT
Statistics
Matches: 36, Mismatches: 14, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.45, C:0.02, G:0.24, T:0.29
Consensus pattern (8 bp):
AATTGAAG
Found at i:7028 original size:24 final size:25
Alignment explanation
Indices: 6973--7029 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 25
6963 CGAAGAGATA
6973 AATTGAAG-TATTGAAGAATTGAAT
1 AATTGAAGATATTGAAGAATTGAAT
* *
6997 AATGGAAGAT-TTGAAGCATTGAAT
1 AATTGAAGATATTGAAGAATTGAAT
*
7021 AGTTGAAGA
1 AATTGAAGA
7030 AAGAGATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 27 0.96
25 1 0.04
ACGTcount: A:0.44, C:0.02, G:0.25, T:0.30
Consensus pattern (25 bp):
AATTGAAGATATTGAAGAATTGAAT
Found at i:7071 original size:16 final size:16
Alignment explanation
Indices: 7050--7080 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7040 TTTGATATAA
*
7050 ATTGAAGCATTGAAGG
1 ATTGAAGAATTGAAGG
7066 ATTGAAGAATTGAAG
1 ATTGAAGAATTGAAG
7081 TTAATTGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.29, T:0.26
Consensus pattern (16 bp):
ATTGAAGAATTGAAGG
Found at i:8039 original size:17 final size:17
Alignment explanation
Indices: 8017--8050 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8007 TTTCCATTCA
8017 TTTTTTCATTTTCTCAT
1 TTTTTTCATTTTCTCAT
* *
8034 TTTTTTTATTTTTTCAT
1 TTTTTTCATTTTCTCAT
8051 CATTTTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTTTCATTTTCTCAT
Found at i:8040 original size:20 final size:19
Alignment explanation
Indices: 8025--8061 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8015 CATTTTTTCA
8025 TTTTC-TCATTTTTTTTATT
1 TTTTCATCATTTTTTTT-TT
8044 TTTTCATCATTTTTTTTT
1 TTTTCATCATTTTTTTTT
8062 CTTCATTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTCATCATTTTTTTTTT
Found at i:13180 original size:14 final size:14
Alignment explanation
Indices: 13161--13187 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
13151 CTTGATGAAA
13161 AATTTTGATTTTTG
1 AATTTTGATTTTTG
13175 AATTTTGATTTTT
1 AATTTTGATTTTT
13188 TTTTGGAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (14 bp):
AATTTTGATTTTTG
Done.