Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001232.1 Corchorus capsularis cultivar CVL-1 contig01232, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9580
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33


Found at i:7238 original size:5 final size:5

Alignment explanation


    Indices: 7224--7271  Score: 71
    Period size: 5  Copynumber: 9.8  Consensus size: 5

       7214 AGACAGCCAT

                                                          *     *     
       7224 ATCT- ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTT ATCTC ATCT
          1 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCT

       7272 TTTTGGTCAG


Statistics
Matches: 41,  Mismatches: 2, Indels: 1
        0.93            0.05        0.02

Matches are distributed among these distances:
   4    4  0.10
   5   37  0.90

ACGTcount: A:0.33, C:0.23, G:0.00, T:0.44


Consensus pattern (5 bp):   
ATCTA

Done.