Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012321.1 Corchorus capsularis cultivar CVL-1 contig12342, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31256

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--49
2
23.0
2
95
4
83
48
0
0
51
1.00
3343--3372
15
2.0
15
93
0
51
46
10
30
13
1.75
14877--14941
27
2.4
28
87
7
98
24
35
16
23
1.95
20190--20220
15
2.1
15
100
0
62
19
35
19
25
1.95
28403--28441
15
2.5
16
91
4
62
53
2
0
43
1.14
28539--28610
31
2.3
31
81
9
83
37
6
2
52
1.43
28539--28612
32
2.3
33
86
9
100
36
8
2
52
1.45
31180--31256
2
38.5
2
100
0
154
50
0
49
0
1.00

Tables:   1

The End!