Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01012326.1 Corchorus capsularis cultivar CVL-1 contig12347, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16778
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Found at i:764 original size:6 final size:6
Alignment explanation
Indices: 753--779 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
743 GTCTAATTAC
753 TATATT TATATT TATATT TATATT TAT
1 TATATT TATATT TATATT TATATT TAT
780 TGTTTGTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TATATT
Found at i:1348 original size:3 final size:3
Alignment explanation
Indices: 1340--1371 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
1330 TCTCATGTGC
1340 ATA ATA ATA ATA ATA ATA ATA ATA ATA CATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA A
1372 GAAGAACAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:4400 original size:27 final size:27
Alignment explanation
Indices: 4370--4435 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
4360 GGTAGAAGAT
4370 AAAGAGAAGAAGGAAAAGAAGAAAAAC
1 AAAGAGAAGAAGGAAAAGAAGAAAAAC
* * * *
4397 AAAGACG-AGAAGGAGAAGGAGAAGAAG
1 AAAGA-GAAGAAGGAAAAGAAGAAAAAC
*
4424 AAAGAAAAGAAG
1 AAAGAGAAGAAG
4436 CTGAAAGATG
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.65, C:0.03, G:0.32, T:0.00
Consensus pattern (27 bp):
AAAGAGAAGAAGGAAAAGAAGAAAAAC
Found at i:4461 original size:93 final size:92
Alignment explanation
Indices: 4311--4483 Score: 215
Period size: 93 Copynumber: 1.9 Consensus size: 92
4301 GAAGAGAAGA
* * * *
4311 AGAAGGATAAGGAGAAAAAGAAAGAAAAGAAGCAGGATAAAGGGGATGAGGTAGAAGATAAAGAG
1 AGAAGGAGAAGGAGAAAAAGAAAGAAAAGAAGCAAGATAAAGAGGATGAGG-AGAAGACAAAGAG
*
4376 AAGAAGGAAAAGAAGAAAAACAAAGACG
65 AAGAAAGAAAAGAAGAAAAACAAAGACG
* *
4404 AGAAGGAGAAGGAGAAGAAGAAAGAAAAGAAGCTGAAAGATGAAGAGGATGA-G-GAAGACAAAG
1 AGAAGGAGAAGGAGAAAAAGAAAGAAAAGAAGC---AAGATAAAGAGGATGAGGAGAAGACAAAG
* *
4467 GGAAGAAAGACAAGAAG
63 AGAAGAAAGAAAAGAAG
4484 CAGAAGGATA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
93 54 0.79
95 1 0.01
96 13 0.19
ACGTcount: A:0.58, C:0.03, G:0.34, T:0.05
Consensus pattern (92 bp):
AGAAGGAGAAGGAGAAAAAGAAAGAAAAGAAGCAAGATAAAGAGGATGAGGAGAAGACAAAGAGA
AGAAAGAAAAGAAGAAAAACAAAGACG
Found at i:4559 original size:27 final size:27
Alignment explanation
Indices: 4529--4580 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
4519 AGCAACAAAG
*
4529 AAAGAGAAGAAGAAAGATGAAGAGGGC
1 AAAGAGAAGAAGAAAGATAAAGAGGGC
*
4556 AAAGAGAAGAAGAAGGATAAAGAGG
1 AAAGAGAAGAAGAAAGATAAAGAGG
4581 TTGAGACAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.58, C:0.02, G:0.37, T:0.04
Consensus pattern (27 bp):
AAAGAGAAGAAGAAAGATAAAGAGGGC
Found at i:4608 original size:96 final size:96
Alignment explanation
Indices: 4494--4854 Score: 457
Period size: 96 Copynumber: 3.8 Consensus size: 96
4484 CAGAAGGATA
* * * * **
4494 AAGATGATGTAGATGAAGATGAAGAAG-CAACAAAGAAAGAGAAGAAGAAAGATGAAGAGGGCAA
1 AAGAAGATGTAGAGGAAGATAAAGAAGTCAA-AAAGAAAGAAAAGAAGAAAGACAAAGAGGGCAA
4558 AGAGAAGAAGAAGGATAAAGAGGTTGAGACAG
65 AGAGAAGAAGAAGGATAAAGAGGTTGAGACAG
* * * * * * *
4590 AAGATGATGGAGAGGAAGAAAAAGAAGTGAAAAAGACAGAAAAGAAGAAAGGCAAAGAGGGCAAG
1 AAGAAGATGTAGAGGAAGATAAAGAAGTCAAAAAGAAAGAAAAGAAGAAAGACAAAGAGGGCAAA
4655 GAGAAGAAGAAGGATAAAGAGGTTGAGACAG
66 GAGAAGAAGAAGGATAAAGAGGTTGAGACAG
* ** * *
4686 AAGAAGATGAAGACAAAGA-AAAGGAAG-CAAAAAAGAAAGAAAAGAAGAAAGAGAAAGGGGGCA
1 AAGAAGATGTAGAGGAAGATAAA-GAAGTC-AAAAAGAAAGAAAAGAAGAAAGACAAAGAGGGCA
4749 AAGAGAAGAAGAAGGATAAAGA---TGAGACAG
64 AAGAGAAGAAGAAGGATAAAGAGGTTGAGACAG
* *
4779 AAGAAGATGTAG-GTGAAGATGAAGAAGTGAAAAAGAAAGAAAAGAAGAAAGACAAAGAGGGCAA
1 AAGAAGATGTAGAG-GAAGATAAAGAAGTCAAAAAGAAAGAAAAGAAGAAAGACAAAGAGGGCAA
4843 AGAGAAGAAGAA
65 AGAGAAGAAGAA
4855 AGAAAAAAAG
Statistics
Matches: 231, Mismatches: 28, Indels: 15
0.84 0.10 0.05
Matches are distributed among these distances:
93 72 0.31
94 2 0.01
95 3 0.01
96 152 0.66
97 2 0.01
ACGTcount: A:0.57, C:0.04, G:0.33, T:0.06
Consensus pattern (96 bp):
AAGAAGATGTAGAGGAAGATAAAGAAGTCAAAAAGAAAGAAAAGAAGAAAGACAAAGAGGGCAAA
GAGAAGAAGAAGGATAAAGAGGTTGAGACAG
Found at i:4812 original size:93 final size:94
Alignment explanation
Indices: 4494--4947 Score: 445
Period size: 96 Copynumber: 4.8 Consensus size: 94
4484 CAGAAGGATA
* * * *
4494 AAGATGATGTAGATGAAGATGAAGAAG-CAACAAAGAAAGAGAAGAAGAAAGATG-AAGAGGGCA
1 AAGAAGATGTAGATGAAGATAAAGAAGTGAA-AAAGAAAGAAAAGAAGAAAGA-GAAAGAGGGCA
4557 AAGAGAAGAAGAAGGATAAAGAGGTTGAGACAG
64 AAGAGAAGAAGAAGGATAAAGA-G-TGAGACAG
* * * * *
4590 AAGATGATGGAGAGGAAGAAAAAGAAGTGAAAAAGACAGAAAAGAAGAAAG-GCAAAGAGGGCAA
1 AAGAAGATGTAGATGAAGATAAAGAAGTGAAAAAGAAAGAAAAGAAGAAAGAG-AAAGAGGGCAA
*
4654 GGAGAAGAAGAAGGATAAAGAGGTTGAGACAG
65 AGAGAAGAAGAAGGATAAAGA-G-TGAGACAG
* ** ** *
4686 AAGAAGATGAAGACAAAGA-AAAGGAAGCAAAAAAGAAAGAAAAGAAGAAAGAGAAAGGGGGCAA
1 AAGAAGATGTAGATGAAGATAAA-GAAGTGAAAAAGAAAGAAAAGAAGAAAGAGAAAGAGGGCAA
4750 AGAGAAGAAGAAGGATAAAGA-TGAGACAG
65 AGAGAAGAAGAAGGATAAAGAGTGAGACAG
* * *
4779 AAGAAGATGTAGGTGAAGATGAAGAAGTGAAAAAGAAAGAAAAGAAGAAAGACAAAGAGGGCAAA
1 AAGAAGATGTAGATGAAGATAAAGAAGTGAAAAAGAAAGAAAAGAAGAAAGAGAAAGAGGGCAAA
* * * ** *
4844 GAGAAGAAGAAAGAAAAAAAGAAAGATA-
66 GAGAAGAAGAAGGATAAAGAGTGAGACAG
* * * * * * * * * **
4872 AAGAGGATG-AGGATGAAGAAAAAGAATTGAAAGACAAAGAGAAGATGAAGGACAAAGAGGATAA
1 AAGAAGATGTA-GATGAAGATAAAGAAGTGAAAAAGAAAGAAAAGAAGAAAGAGAAAGAGGGCAA
*
4936 GGAGAAGAAGAA
65 AGAGAAGAAGAA
4948 CAAGAAAAAA
Statistics
Matches: 305, Mismatches: 45, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
92 1 0.00
93 139 0.46
94 7 0.02
95 3 0.01
96 152 0.50
97 3 0.01
ACGTcount: A:0.57, C:0.04, G:0.32, T:0.07
Consensus pattern (94 bp):
AAGAAGATGTAGATGAAGATAAAGAAGTGAAAAAGAAAGAAAAGAAGAAAGAGAAAGAGGGCAAA
GAGAAGAAGAAGGATAAAGAGTGAGACAG
Found at i:4828 original size:12 final size:12
Alignment explanation
Indices: 4811--4875 Score: 67
Period size: 12 Copynumber: 5.1 Consensus size: 12
4801 AGAAGTGAAA
4811 AAGAAAGAAAAG
1 AAGAAAGAAAAG
4823 AAGAAAGACAAAG
1 AAGAAAGA-AAAG
* *
4836 AGGGCAAAGAGAAG
1 A-AG-AAAGAAAAG
*
4850 AAGAAAGAAAAA
1 AAGAAAGAAAAG
4862 AAGAAAGATAAAG
1 AAGAAAGA-AAAG
4875 A
1 A
4876 GGATGAGGAT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
12 23 0.53
13 10 0.23
14 5 0.12
15 5 0.12
ACGTcount: A:0.69, C:0.03, G:0.26, T:0.02
Consensus pattern (12 bp):
AAGAAAGAAAAG
Found at i:4947 original size:189 final size:189
Alignment explanation
Indices: 4515--4947 Score: 469
Period size: 189 Copynumber: 2.3 Consensus size: 189
4505 GATGAAGATG
* * * ** *
4515 AAGAAGCAACAAAGAAAGAGAAGAAGAAAGATGAAGAGGGCAAAGAGAAGAAGAAGGATAAAGAG
1 AAGAAGCAAAAAACAAAGAAAAGAAGAAAGACAAAGAGGACAAAGAGAAGAAGAAGGATAAAGA-
* * *
4580 GTTGAGACAGAAGATGATGGAGAGGAAGAAAAAGAAGTGAAAAAGACAGAAAAGAAGAAAGGCAA
65 --TGAGACAGAAGAAGATGGAGAGGAAGAAAAAGAAGTGAAAAAGAAAGAAAAGAAGAAAGACAA
* * * * **
4645 AGAGGGCAAGGAGAAGAAGAAGGATAAAGAGGTTGAGACAGAAGAAGATGAAGACAAAGAAA
128 AGAGGGCAAAGAGAAGAAGAAAGATAAAAAAGTAAAGACAGAAGAAGATGAAGACAAAGAAA
* * * * *
4707 AGGAAGCAAAAAAGAAAGAAAAGAAGAAAGAGAAAGGGGGCAAAGAGAAGAAGAAGGATAAAGAT
1 AAGAAGCAAAAAACAAAGAAAAGAAGAAAGACAAAGAGGACAAAGAGAAGAAGAAGGATAAAGAT
* **
4772 GAGACAGAAGAAGATGTAG-GTGAAGATGAAGAAGTGAAAAAGAAAGAAAAGAAGAAAGACAAAG
66 GAGACAGAAGAAGATGGAGAG-GAAGAAAAAGAAGTGAAAAAGAAAGAAAAGAAGAAAGACAAAG
* * * **
4836 AGGGCAAAGAGAAGAAGAAAGA-AAAAAAG-AAAGATA-AAGAGGATGAGGATGAAGAAA
130 AGGGCAAAGAGAAGAAGAAAGATAAAAAAGTAAAGACAGAAGAAGATGAAGACAAAGAAA
*** * * * * * *
4893 AAGAATTGAAAGACAAAGAGAAGATGAAGGACAAAGAGGATAAGGAGAAGAAGAA
1 AAGAAGCAAAAAACAAAGAAAAGAAGAAAGACAAAGAGGACAAAGAGAAGAAGAA
4948 CAAGAAAAAA
Statistics
Matches: 203, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
186 58 0.29
187 4 0.02
188 6 0.03
189 77 0.38
192 58 0.29
ACGTcount: A:0.58, C:0.04, G:0.32, T:0.06
Consensus pattern (189 bp):
AAGAAGCAAAAAACAAAGAAAAGAAGAAAGACAAAGAGGACAAAGAGAAGAAGAAGGATAAAGAT
GAGACAGAAGAAGATGGAGAGGAAGAAAAAGAAGTGAAAAAGAAAGAAAAGAAGAAAGACAAAGA
GGGCAAAGAGAAGAAGAAAGATAAAAAAGTAAAGACAGAAGAAGATGAAGACAAAGAAA
Found at i:5062 original size:39 final size:34
Alignment explanation
Indices: 4985--5062 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 34
4975 AGAAGAAGAT
*
4985 GAAGAGAAAAAGAAGAAGAAAGGAAAGGATGAGA
1 GAAGAGAAAAAGAAGAAGAAAGCAAAGGATGAGA
5019 -AAGAGAAAAAGAA-ACAGAAGAAGCACAAGGATGATGAA
1 GAAGAGAAAAAGAAGA-AG-A-AAGCA-AAGGATGA-G-A
5057 GAAGAG
1 GAAGAG
5063 GGAGAAGTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
32 1 0.03
33 15 0.42
34 1 0.03
35 4 0.11
36 8 0.22
37 1 0.03
38 1 0.03
39 5 0.14
ACGTcount: A:0.60, C:0.04, G:0.32, T:0.04
Consensus pattern (34 bp):
GAAGAGAAAAAGAAGAAGAAAGCAAAGGATGAGA
Found at i:11573 original size:41 final size:41
Alignment explanation
Indices: 11526--11603 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
11516 TATCAAAATA
11526 CGGATGCTTAGTTATCTTTTAGACCTACTCAAGGGCCTGGG
1 CGGATGCTTAGTTATCTTTTAGACCTACTCAAGGGCCTGGG
11567 CGGATGCTTAGTTATCTTTTAGACCTACTCAAGGGCC
1 CGGATGCTTAGTTATCTTTTAGACCTACTCAAGGGCC
11604 CGGGTATTCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (41 bp):
CGGATGCTTAGTTATCTTTTAGACCTACTCAAGGGCCTGGG
Found at i:12039 original size:22 final size:22
Alignment explanation
Indices: 12013--12061 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
12003 GAATTTCGAG
* *
12013 AACCTTTTTAT-AAATTTTTTTT
1 AACCTTCTTATGAAA-TTTTGTT
12035 AACCTTCTTATGAAATTTTGTT
1 AACCTTCTTATGAAATTTTGTT
12057 AACCT
1 AACCT
12062 CTCTAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 21 0.88
23 3 0.12
ACGTcount: A:0.29, C:0.14, G:0.04, T:0.53
Consensus pattern (22 bp):
AACCTTCTTATGAAATTTTGTT
Found at i:12238 original size:22 final size:22
Alignment explanation
Indices: 12213--12327 Score: 79
Period size: 23 Copynumber: 5.1 Consensus size: 22
12203 GAATTGTTAG
* *
12213 TAATCGCACTCTGAAATTTTGA
1 TAATCACACTATGAAATTTTGA
12235 TAATCACACTATG-AATTTGTGA
1 TAATCACACTATGAAATTT-TGA
* * *
12257 TAACCTCGCTATGAAATTTTGA
1 TAATCACACTATGAAATTTTGA
*** *
12279 TAAATCTTTCTATAAAATTTTGA
1 T-AATCACACTATGAAATTTTGA
* * * *
12302 TAAACCTCCCTATAAAATTTTGA
1 T-AATCACACTATGAAATTTTGA
12325 TAA
1 TAA
12328 CTTTCTTATG
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
21 5 0.06
22 30 0.38
23 43 0.55
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.38
Consensus pattern (22 bp):
TAATCACACTATGAAATTTTGA
Found at i:12320 original size:46 final size:45
Alignment explanation
Indices: 12248--12349 Score: 127
Period size: 46 Copynumber: 2.2 Consensus size: 45
12238 TCACACTATG
* *
12248 AATTTGTGAT-AACCTCGCTATGAAATTTTGATAAATCTTTC-TATAA
1 AATTT-TGATAAACCTCCCTATAAAATTTTGAT-AA-CTTTCTTATAA
*
12294 AATTTTGATAAACCTCCCTATAAAATTTTGATAACTTTCTTATGA
1 AATTTTGATAAACCTCCCTATAAAATTTTGATAACTTTCTTATAA
*
12339 AATCTTGATAA
1 AATTTTGATAA
12350 CTACAAATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
44 5 0.10
45 20 0.40
46 25 0.50
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (45 bp):
AATTTTGATAAACCTCCCTATAAAATTTTGATAACTTTCTTATAA
Found at i:12351 original size:22 final size:22
Alignment explanation
Indices: 12265--12349 Score: 91
Period size: 23 Copynumber: 3.8 Consensus size: 22
12255 GATAACCTCG
*
12265 CTATGAAATTTTGATAAATCTTT
1 CTATAAAATTTTGATAAA-CTTT
**
12288 CTATAAAATTTTGATAAACCTCC
1 CTATAAAATTTTGATAAA-CTTT
12311 CTATAAAATTTTGAT-AACTTT
1 CTATAAAATTTTGATAAACTTT
* *
12332 CTTATGAAATCTTGATAA
1 C-TATAAAATTTTGATAA
12350 CTACAAATTT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
21 3 0.06
22 14 0.27
23 35 0.67
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (22 bp):
CTATAAAATTTTGATAAACTTT
Found at i:12418 original size:45 final size:41
Alignment explanation
Indices: 12354--12447 Score: 109
Period size: 45 Copynumber: 2.2 Consensus size: 41
12344 TGATAACTAC
*
12354 AAATTTTGCTAACCTCCCTATGATTTTTTGATAA-CCTCATTATGG
1 AAATTTTGCTAACCTCCCTA--A-ATTTTGATAACCCTC-TTAT-G
* *
12399 AAATTTTGTTAATCTCCCTAAATTTTGATAACCCTCTTATG
1 AAATTTTGCTAACCTCCCTAAATTTTGATAACCCTCTTATG
12440 AAATTTTG
1 AAATTTTG
12448 AAAACTAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
41 9 0.20
42 13 0.29
43 5 0.11
45 18 0.40
ACGTcount: A:0.29, C:0.18, G:0.10, T:0.44
Consensus pattern (41 bp):
AAATTTTGCTAACCTCCCTAAATTTTGATAACCCTCTTATG
Found at i:12446 original size:22 final size:21
Alignment explanation
Indices: 12224--12448 Score: 108
Period size: 22 Copynumber: 10.5 Consensus size: 21
12214 AATCGCACTC
*
12224 TGAAATTTTGATAATCACAC-TA
1 TGAAATTTTGATAA-C-CTCTTA
*
12246 TG-AATTTGTGATAACCTCGCTA
1 TGAAATTT-TGATAACCTC-TTA
* *
12268 TGAAATTTTGATAAATCTTTCTA
1 TGAAATTTTGAT-AACCTCT-TA
* *
12291 TAAAATTTTGATAAACCTCCCTA
1 TGAAATTTTGAT-AACCT-CTTA
* *
12314 TAAAATTTTGATAACTTTCTTA
1 TGAAATTTTGATAAC-CTCTTA
*
12336 TGAAATCTTGATAA---C-TA
1 TGAAATTTTGATAACCTCTTA
* * *
12353 -CAAATTTTGCTAACCTCCCTA
1 TGAAATTTTGATAACCT-CTTA
**
12374 TGATTTTTTGATAACCTCATTA
1 TGAAATTTTGATAACCTC-TTA
* * **
12396 TGGAAATTTTGTTAATCTC-CC
1 T-GAAATTTTGATAACCTCTTA
12417 T-AAATTTTGATAACCCTCTTA
1 TGAAATTTTGATAA-CCTCTTA
12438 TGAAATTTTGA
1 TGAAATTTTGA
12449 AAACTAAACT
Statistics
Matches: 154, Mismatches: 30, Indels: 38
0.69 0.14 0.17
Matches are distributed among these distances:
16 10 0.06
17 2 0.01
18 1 0.01
19 11 0.07
20 6 0.04
21 11 0.07
22 58 0.38
23 55 0.36
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.41
Consensus pattern (21 bp):
TGAAATTTTGATAACCTCTTA
Found at i:13794 original size:3 final size:3
Alignment explanation
Indices: 13786--13822 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
13776 TTTACATTTA
13786 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
13823 TACTGATCAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Done.