Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012327.1 Corchorus capsularis cultivar CVL-1 contig12348, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110853

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3831--3922
45
2.0
45
95
0
166
14
23
16
45
1.84
4122--4154
2
16.0
2
93
6
57
48
3
0
48
1.17
4293--4325
11
3.0
11
90
0
57
45
9
6
39
1.61
16026--16249
119
1.9
119
87
6
330
34
15
18
31
1.92
16311--16386
38
2.0
38
94
0
134
27
18
30
23
1.98
16480--16522
15
2.9
15
96
0
77
20
34
23
20
1.96
18240--18264
3
8.3
3
100
0
50
68
32
0
0
0.90
22074--22134
29
2.1
29
93
3
106
19
26
19
34
1.96
27718--27769
22
2.5
20
72
9
52
44
1
0
53
1.11
27944--28025
43
1.9
43
92
0
137
24
26
10
37
1.89
37003--37034
12
2.4
14
90
10
50
46
3
9
40
1.52
37793--37821
8
3.6
8
100
0
58
10
0
0
89
0.48
38082--38128
22
2.1
22
92
0
76
42
6
6
44
1.55
38082--38124
11
3.9
11
84
0
59
41
6
6
44
1.58
39016--39580
156
3.6
155
80
5
613
30
16
20
32
1.95
43133--43177
21
2.1
22
87
4
65
22
33
8
35
1.85
43351--43427
33
2.3
33
88
4
111
16
35
37
10
1.83
43450--43651
33
6.1
32
80
9
219
11
38
32
18
1.86
43461--43651
66
2.9
66
90
1
294
10
38
31
18
1.86
43450--43656
99
2.1
100
85
3
276
12
38
31
17
1.87
46152--46286
27
5.0
27
85
2
182
26
35
20
17
1.94
49853--49953
32
3.0
33
72
17
98
26
27
22
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49853--49928
36
2.1
38
85
9
104
26
27
23
22
1.99
49920--49965
22
2.1
22
91
0
74
23
32
17
26
1.97
55116--55215
29
3.5
29
86
6
143
34
8
10
48
1.66
55197--55237
19
2.3
18
87
8
57
43
7
4
43
1.53
58492--58545
27
2.0
27
100
0
108
48
7
14
29
1.71
64841--64894
28
1.9
28
85
7
74
44
11
22
22
1.84
84380--84413
2
17.5
2
93
6
61
52
0
47
0
1.00
87111--87163
15
3.8
15
70
27
53
28
16
0
54
1.43
87101--87152
26
2.0
26
100
0
104
26
19
0
53
1.45
98843--98900
23
2.5
23
94
0
98
24
15
20
39
1.91
99020--99077
23
2.6
22
91
5
73
34
6
12
46
1.68
99026--99077
23
2.3
23
100
0
104
34
3
11
50
1.57
101616--101645
6
5.0
6
100
0
60
16
16
16
50
1.79
107878--107937
30
2.0
30
93
0
102
18
25
25
31
1.97

Tables:   1

The End!