genome.fa.s12328.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012328.1 Corchorus capsularis cultivar CVL-1 contig12349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122783

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26--67	2	22.0	2	85	9	61	54	0	0	45	0.99
26--66	17	2.4	17	92	8	66	56	0	0	43	0.99
3456--3777	167	1.9	166	95	0	581	41	16	10	31	1.82
6945--7016	31	2.3	31	90	4	119	36	20	13	29	1.92
10632--10718	43	2.0	43	95	0	156	21	16	29	32	1.95
10813--10857	23	2.0	23	82	8	56	2	33	0	64	1.06
17317--17523	31	6.3	31	76	14	200	41	9	17	31	1.82
17247--17523	35	8.0	35	76	13	261	41	8	18	32	1.80
49737--50055	158	2.0	158	98	0	620	29	16	13	39	1.87
61717--61793	30	2.6	30	95	0	136	22	20	46	10	1.80
63973--64063	30	3.1	30	82	4	105	42	12	19	25	1.86
65604--65758	51	3.0	51	92	0	256	18	19	42	19	1.89
65711--65876	90	1.8	90	89	0	260	20	16	42	20	1.90
65706--65896	90	2.1	90	85	1	258	19	18	41	20	1.91
67909--67983	36	2.1	36	100	0	150	33	2	29	34	1.72
69585--69625	21	2.0	21	90	0	64	31	9	9	48	1.69
70361--70395	18	1.9	18	100	0	70	20	22	28	28	1.98
71580--71636	16	3.5	17	81	11	75	54	31	10	3	1.51
71768--71852	32	2.7	32	88	0	134	37	37	9	15	1.80
71767--71869	17	6.3	16	74	8	84	38	37	8	14	1.77
81548--81616	36	1.9	36	96	0	129	40	13	13	33	1.82
81794--81877	36	2.4	35	92	5	136	33	13	9	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85831--85896	21	3.0	23	88	8	109	30	3	9	57	1.45
88112--88156	16	2.8	16	75	3	54	4	4	33	57	1.38
89249--89334	29	2.9	28	75	21	86	40	16	9	33	1.80
89762--89841	29	2.6	31	84	3	101	31	6	22	40	1.79
94034--94118	18	4.7	18	88	0	107	7	14	43	35	1.72
98517--98559	21	2.1	20	91	4	68	41	16	0	41	1.48
99238--99521	146	2.0	143	90	2	451	37	7	3	51	1.47
100158--100199	20	2.1	20	90	0	66	23	7	16	52	1.68
102923--102975	6	9.3	6	73	19	51	33	16	1	47	1.58
102928--102974	13	3.6	13	83	11	53	34	17	2	46	1.59
106702--106735	14	2.5	13	86	9	50	26	0	38	35	1.57
106710--106742	14	2.4	14	100	0	66	21	0	45	33	1.52
107644--107909	146	1.8	146	92	0	451	36	9	2	51	1.48
110988--111549	188	3.0	188	95	0	1013	31	20	14	32	1.93
113626--113687	28	2.3	27	86	8	83	20	12	19	46	1.83

Tables:   1

The End!