Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012329.1 Corchorus capsularis cultivar CVL-1 contig12350, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4523
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37


Found at i:250 original size:26 final size:26

Alignment explanation


    Indices: 197--251  Score: 65
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        187 TGTTTTGATC

                        *  * *     *  
        197 ATTATTCTCACTTTTTTTAAAAGGAA
          1 ATTATTCTCACTATTATAAAAAGCAA

                                  *   
        223 ATTATTCTCACTATTATAAAAATCAA
          1 ATTATTCTCACTATTATAAAAAGCAA

               
        249 ATT
          1 ATT

        252 TGGATTAATC


Statistics
Matches: 24,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.40, C:0.13, G:0.04, T:0.44


Consensus pattern (26 bp):   
ATTATTCTCACTATTATAAAAAGCAA

Found at i:4289 original size:2 final size:2

Alignment explanation


    Indices: 4244--4270  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       4234 AGCATGTATT

                                                    
       4244 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

       4271 GTTGTTAGTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA
Done.