genome.fa.s12332.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012332.1 Corchorus capsularis cultivar CVL-1 contig12353, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76283

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277--328	25	2.1	25	88	0	77	44	11	26	17	1.83
1899--1959	32	1.9	32	93	0	104	26	14	13	45	1.81
5806--5848	21	2.2	20	83	8	52	67	6	4	20	1.33
6684--6708	5	5.0	5	100	0	50	0	20	0	80	0.72
7019--7129	35	3.1	35	85	3	152	33	12	10	43	1.78
7249--7293	15	2.9	15	83	3	54	24	11	2	62	1.40
9028--9078	12	4.2	12	73	7	50	72	1	23	1	1.05
9042--9086	15	2.6	18	86	13	60	71	2	26	0	0.98
9028--9094	27	2.7	25	75	11	66	74	1	20	2	1.03
9030--9094	25	2.7	23	73	17	67	75	1	20	3	1.02
10183--10220	18	2.1	18	95	0	67	50	5	7	36	1.54
11299--11341	12	3.5	12	77	3	50	27	16	44	11	1.82
11299--11353	24	2.3	24	96	0	101	27	18	41	12	1.86
11362--11411	24	2.1	24	84	0	64	28	24	32	16	1.96
12303--12365	31	2.0	31	90	0	99	23	4	20	50	1.67
12365--12426	21	3.0	21	95	0	106	37	11	25	25	1.89
12824--12849	5	5.2	5	100	0	52	42	38	19	0	1.51
13798--13871	38	2.0	36	89	5	112	37	16	24	21	1.93
14182--14208	13	2.1	13	100	0	54	37	7	7	48	1.59
22641--22665	2	12.5	2	100	0	50	52	0	0	48	1.00
23941--24010	29	2.3	31	82	4	81	35	12	21	30	1.91
32814--32864	14	3.6	14	72	17	52	35	9	7	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35461--35498	2	19.0	2	100	0	76	50	0	0	50	1.00
35477--35693	108	2.0	108	99	0	425	32	18	8	40	1.81
47145--47201	29	2.0	29	82	6	71	54	15	5	24	1.62
49679--49782	51	2.0	51	94	0	181	47	14	11	26	1.78
51338--51370	5	6.6	5	100	0	66	0	18	0	81	0.68
53512--53630	59	2.0	59	98	0	229	28	19	13	38	1.89
54466--54523	31	1.9	31	92	3	100	43	5	22	29	1.75
54463--54534	31	2.4	31	81	6	94	43	4	18	34	1.69
54562--54855	145	2.0	146	96	0	545	32	18	21	26	1.97
61427--61466	21	1.9	21	94	0	71	7	15	32	45	1.74
66219--66249	15	2.1	15	93	0	53	32	3	29	35	1.73
69675--69703	2	15.0	2	92	7	51	48	0	0	51	1.00

Tables:   1

The End!