Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012333.1 Corchorus capsularis cultivar CVL-1 contig12354, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62271

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3578--3827
132
1.9
134
91
4
416
46
2
10
40
1.52
3911--3942
4
8.0
4
100
0
64
50
0
25
25
1.50
8157--8215
15
3.9
15
84
0
64
42
23
22
11
1.86
14244--14268
10
2.5
10
100
0
50
48
20
8
24
1.76
15064--15098
13
2.7
13
95
0
61
20
11
8
60
1.57
15153--15182
13
2.3
13
100
0
60
30
0
6
63
1.20
22201--22246
22
2.1
22
84
8
58
30
8
43
17
1.79
33298--33508
57
3.6
58
85
5
284
27
26
10
34
1.90
37699--37767
29
2.3
29
80
7
77
43
0
7
49
1.30
50346--50417
23
3.1
23
89
0
108
47
27
12
12
1.77
50655--50687
17
1.9
17
88
11
50
48
0
3
48
1.17
53939--53978
21
1.9
21
94
0
71
55
20
15
10
1.68
53939--53985
21
2.2
21
88
0
67
57
19
12
10
1.64
59691--59730
21
1.9
21
100
0
80
10
17
20
52
1.72
60784--60840
26
2.2
26
87
9
82
35
5
15
43
1.70
61897--61946
25
1.9
25
88
8
73
70
2
6
22
1.20
61909--61973
12
5.3
12
73
10
60
70
0
4
24
1.06
61898--61973
24
3.0
24
84
5
80
68
1
5
25
1.18
61923--62010
36
2.4
35
81
7
104
62
1
5
30
1.26
62062--62101
17
2.4
17
95
0
71
55
2
10
32
1.47
62074--62126
27
2.0
27
88
7
81
58
3
9
28
1.47
62054--62150
44
2.2
45
78
12
103
58
2
11
27
1.44

Tables:   1

The End!