Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012337.1 Corchorus capsularis cultivar CVL-1 contig12358, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82359

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2180--2219
13
3.1
13
85
0
53
45
15
15
25
1.84
3576--3737
59
2.7
60
95
0
290
33
20
20
24
1.97
3770--3869
31
3.3
31
66
20
84
27
16
17
40
1.90
3770--3929
60
2.7
60
87
4
225
29
16
16
37
1.91
11423--11451
2
14.5
2
100
0
58
51
0
0
48
1.00
13661--13693
17
1.9
17
93
0
57
75
0
18
6
1.00
15151--15205
25
2.2
25
83
9
67
61
7
1
29
1.33
15763--16473
354
2.0
354
84
5
920
43
15
13
27
1.84
16852--16877
3
8.7
3
100
0
52
34
0
0
65
0.93
17728--17772
23
2.0
23
100
0
90
40
26
15
17
1.90
17948--17998
3
17.0
3
100
0
102
33
0
0
66
0.92
18936--18980
22
2.0
22
91
0
72
48
13
17
20
1.80
19694--19737
22
2.0
22
100
0
88
40
13
9
36
1.76
26808--26865
24
2.4
24
88
11
100
56
27
12
3
1.51
28279--28522
120
2.0
120
81
7
282
31
19
15
32
1.93
28497--28806
155
2.0
155
85
3
419
33
20
16
29
1.95
44380--44411
10
3.3
10
91
8
57
18
0
0
81
0.70
44380--44410
9
3.3
9
95
4
53
19
0
0
80
0.71
46907--46981
33
2.3
33
86
2
98
13
34
38
13
1.84
52762--52812
25
2.0
25
100
0
102
35
0
11
52
1.38
52766--52829
25
2.5
25
87
2
83
39
3
17
40
1.65
53209--53361
77
2.0
77
98
0
297
30
12
10
46
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65169--65203
14
2.5
14
90
0
52
51
34
0
14
1.42
75766--75790
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!