Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012341.1 Corchorus capsularis cultivar CVL-1 contig12362, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60896

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67--127
15
4.4
15
73
21
53
31
1
11
55
1.45
71--126
26
2.2
26
83
6
69
32
1
10
55
1.45
136--195
25
2.5
25
86
5
79
43
0
20
36
1.52
266--309
21
2.1
21
91
0
70
36
9
40
13
1.76
12505--12546
6
7.5
6
79
15
54
0
50
0
50
1.00
12505--12549
21
2.1
21
95
0
81
0
51
0
48
1.00
12509--12540
15
2.1
15
94
0
55
0
50
0
50
1.00
13503--13544
15
2.7
15
92
3
66
2
16
0
80
0.81
13503--13544
16
2.7
16
88
3
59
2
16
0
80
0.81
19004--19083
29
2.8
28
84
5
97
26
25
13
35
1.93
29488--29552
32
2.0
32
100
0
130
24
16
24
33
1.96
32344--32384
18
2.3
18
82
0
55
51
7
17
24
1.70
32510--32575
25
2.7
25
90
2
98
42
19
27
10
1.84
33035--33074
20
2.1
20
86
9
57
22
0
5
72
1.04
34528--34555
6
4.7
6
100
0
56
35
0
50
14
1.43
49553--49587
17
2.0
18
88
5
54
42
0
17
40
1.49
60270--60296
12
2.2
12
100
0
54
14
18
14
51
1.76

Tables:   1

The End!