Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012343.1 Corchorus capsularis cultivar CVL-1 contig12364, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30510

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10042--10087
22
2.1
22
91
0
74
17
39
8
34
1.80
10157--10238
25
3.4
24
83
6
103
32
28
0
39
1.57
10465--10542
15
5.7
15
70
21
64
30
1
11
56
1.43
10465--10597
26
5.0
26
71
16
101
30
2
11
56
1.47
10530--10627
30
3.4
30
69
21
100
26
5
12
56
1.57
10507--10636
56
2.3
56
97
0
242
29
3
10
56
1.51
10538--10621
26
3.1
26
64
29
66
25
4
11
58
1.53
10622--10668
22
2.1
23
88
4
69
31
2
8
57
1.41
10639--10801
70
2.3
70
95
0
299
33
4
9
53
1.52
12281--12355
32
2.3
32
88
2
105
42
6
6
44
1.57
12843--12882
22
1.9
22
90
10
66
10
5
17
67
1.37
16063--16117
15
3.9
15
72
18
55
52
12
1
32
1.50
16717--17235
66
7.8
66
83
6
460
40
16
19
23
1.90
16717--17235
132
3.9
132
81
6
516
40
16
19
23
1.90
21713--21783
32
2.2
32
85
5
90
16
42
30
9
1.81
22494--22550
16
3.6
16
69
9
53
38
31
8
21
1.84
22462--22545
32
2.6
33
86
3
109
39
30
9
20
1.84
26516--26545
15
1.9
16
93
6
53
60
16
0
23
1.36
27244--27308
33
2.0
33
100
0
130
24
23
12
40
1.89

Tables:   1

The End!