Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012345.1 Corchorus capsularis cultivar CVL-1 contig12366, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47800

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
389--457
16
4.4
16
87
10
106
5
11
39
43
1.65
389--457
31
2.2
32
92
7
115
5
11
39
43
1.65
1224--1283
16
3.7
16
82
6
59
1
20
48
30
1.59
1290--1399
58
1.9
58
98
0
211
11
16
35
36
1.85
4497--4527
5
6.2
5
92
0
53
22
16
58
3
1.52
4931--4972
22
1.9
22
100
0
84
42
16
4
35
1.69
8022--8061
21
1.9
21
100
0
80
20
10
12
57
1.63
8259--8563
61
5.0
61
98
0
578
50
12
14
22
1.76
10699--10776
29
2.7
28
77
15
86
39
29
14
16
1.88
12170--12230
27
2.2
27
91
2
95
8
31
6
54
1.56
15133--15172
21
1.9
21
85
10
55
25
20
25
30
1.99
18820--18975
71
2.2
70
84
7
192
51
1
10
35
1.48
19116--19148
2
16.5
2
100
0
66
51
0
0
48
1.00
19220--19284
32
2.0
34
90
6
107
20
9
36
33
1.84
19403--19500
49
2.0
49
100
0
196
53
4
16
26
1.61
28245--28320
30
2.5
30
87
8
93
19
11
26
42
1.86
28229--28418
102
1.9
98
89
6
292
20
13
25
40
1.89
28347--28451
26
3.6
28
73
25
101
20
11
25
42
1.85
28365--28477
58
1.9
58
94
0
199
19
12
24
43
1.85
28347--28449
30
3.5
29
73
23
99
19
11
26
42
1.85
28347--28475
26
4.5
28
71
24
76
19
11
26
42
1.85
28743--28767
12
2.1
12
100
0
50
44
16
8
32
1.76

Tables:   1

The End!