Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012346.1 Corchorus capsularis cultivar CVL-1 contig12367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73359

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1036--1081
12
3.9
12
88
5
76
8
21
28
41
1.83
10496--10619
64
2.0
64
98
1
241
42
3
8
45
1.51
10506--10648
64
2.2
64
86
7
193
46
2
9
41
1.50
10630--10790
78
2.1
77
88
4
243
51
0
13
35
1.41
14473--14499
4
6.8
4
100
0
54
25
0
0
74
0.83
32058--32092
16
2.2
16
100
0
70
5
31
5
57
1.46
32146--32199
27
2.0
27
96
0
99
29
12
3
53
1.56
32153--32202
13
3.7
14
71
7
50
30
12
4
54
1.55
32153--32210
27
2.1
27
81
6
64
32
10
5
51
1.58
46815--47412
299
2.0
299
99
0
1178
28
13
17
39
1.89
52182--52206
9
2.8
9
100
0
50
32
0
32
36
1.58
55060--55127
34
2.0
34
100
0
136
17
14
23
44
1.86
62626--62665
19
2.0
20
85
4
55
0
35
20
45
1.51
63951--63975
13
1.9
13
100
0
50
88
0
12
0
0.53
71049--71208
60
2.7
60
88
0
212
36
16
20
26
1.94
71109--71208
31
3.3
31
69
16
100
34
20
22
24
1.97
71241--71313
31
2.4
31
90
0
128
21
19
17
41
1.91
71274--71433
60
2.7
60
80
7
191
28
18
16
36
1.92

Tables:   1

The End!