Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012349.1 Corchorus capsularis cultivar CVL-1 contig12370, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52883

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1768--2045
142
2.0
143
97
0
531
48
15
12
23
1.78
4478--4619
38
3.7
38
88
5
212
34
14
15
35
1.88
4651--4703
26
2.0
27
85
14
74
24
13
3
58
1.51
7064--7089
13
2.0
13
100
0
52
46
23
0
30
1.53
7078--7135
22
2.7
22
91
2
91
51
25
1
20
1.57
7773--7821
19
2.5
20
80
12
57
61
4
22
12
1.48
8346--8433
41
2.2
40
81
8
97
30
20
15
32
1.94
8355--8434
41
1.9
43
87
5
119
31
18
15
35
1.92
8513--10111
797
2.0
797
83
4
2013
30
24
14
31
1.94
10361--10491
34
3.9
34
100
0
262
27
20
24
27
1.99
12687--12751
17
4.2
16
81
16
68
30
7
3
58
1.42
12828--12873
12
3.8
12
76
0
56
19
8
2
69
1.25
12815--12889
24
3.1
24
84
7
82
20
9
2
68
1.30
13357--13408
26
2.0
27
88
3
79
5
0
15
78
0.92
13356--13410
17
3.3
16
85
7
65
5
0
14
80
0.89
13452--13492
10
4.0
11
84
15
61
26
0
9
63
1.25
16731--16768
11
3.3
11
92
7
58
28
26
13
31
1.93
24465--24504
11
3.5
11
86
6
53
85
5
10
0
0.75
25512--25906
54
7.3
54
81
5
415
23
17
25
33
1.96
27286--27322
17
2.2
17
95
0
65
32
10
2
54
1.49
27371--27519
4
36.5
4
72
11
88
24
6
2
67
1.24
27371--27517
24
6.3
24
75
8
108
25
6
2
66
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33235--33292
27
2.1
27
96
0
107
20
24
31
24
1.98
33435--34686
632
2.0
633
92
1
2111
32
17
15
34
1.91
38193--38230
2
18.5
2
94
5
67
47
0
2
50
1.15
41108--41150
20
2.2
19
83
4
50
60
23
11
4
1.50
43933--44014
35
2.4
34
82
13
98
21
7
10
59
1.55
51296--51344
14
3.6
14
75
5
55
55
0
14
30
1.40
51660--51697
11
3.5
11
89
10
51
39
0
2
57
1.12
51862--51888
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!