Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012355.1 Corchorus capsularis cultivar CVL-1 contig12376, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61580

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1135--1192
21
2.5
22
89
10
82
39
20
10
29
1.86
3182--3233
26
2.0
26
100
0
104
30
15
30
23
1.95
7048--7368
128
2.5
128
95
0
579
30
16
12
40
1.86
8191--8316
63
2.0
63
100
0
252
25
17
20
36
1.94
14461--14486
11
2.4
11
100
0
52
26
15
0
57
1.38
20787--20823
3
12.3
3
100
0
74
67
0
0
32
0.91
21228--21262
14
2.6
13
82
8
52
31
5
45
17
1.71
21506--21623
58
2.0
58
100
0
236
18
18
18
44
1.88
23446--23602
78
2.0
78
94
0
278
24
14
13
47
1.80
23602--23629
2
14.0
2
100
0
56
50
0
0
50
1.00
24458--24491
16
2.1
16
100
0
68
11
23
23
41
1.87
24976--25002
11
2.5
11
100
0
54
22
0
14
62
1.31
25085--25144
30
2.0
30
87
6
86
45
1
5
48
1.34
25968--26229
141
1.8
141
89
1
407
35
11
12
40
1.80
26290--26339
26
1.9
26
91
0
82
50
8
10
32
1.65
34254--34286
6
5.5
6
96
0
57
63
0
0
36
0.95
35043--35102
29
2.1
29
100
0
120
38
11
13
36
1.81
35832--35878
23
2.0
23
91
0
76
31
19
10
38
1.86
36128--36154
12
2.2
12
100
0
54
25
7
33
33
1.84
45470--45530
2
30.5
2
96
0
113
1
0
47
50
1.10
47968--48001
13
2.7
13
95
4
61
38
14
38
8
1.78
49509--49788
98
2.9
96
85
5
332
31
16
26
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49548--49788
49
4.9
48
70
6
180
31
16
26
25
1.96
50209--50251
18
2.5
17
80
3
50
48
9
4
37
1.56
54030--54074
21
2.2
21
88
4
65
24
2
0
73
0.95
54036--54075
21
2.0
20
95
5
71
25
0
0
75
0.81
59060--59220
86
1.9
86
92
2
270
45
6
14
33
1.70
59072--59371
161
1.9
162
92
4
507
42
6
16
34
1.74
61498--61522
13
1.9
13
100
0
50
56
16
4
24
1.57

Tables:   1

The End!