Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012356.1 Corchorus capsularis cultivar CVL-1 contig12377, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5048
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.28


Found at i:295 original size:20 final size:21

Alignment explanation


    Indices: 270--309  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 21

        260 AAATACTTAC

                                  
        270 CTCTCTT-TA-AACCAATGAAT
          1 CTCTCTTATATAACC-ATGAAT

                                
        290 CTCTCTTATATAACCATGAA
          1 CTCTCTTATATAACCATGAA

        310 ATTTAACAAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  20    7  0.39
  21    7  0.39
  22    4  0.22

ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35


Consensus pattern (21 bp):   
CTCTCTTATATAACCATGAAT

Found at i:937 original size:25 final size:25

Alignment explanation


    Indices: 892--939  Score: 69
    Period size: 25  Copynumber: 1.9  Consensus size: 25

        882 TGATACGCTT

                      *              
        892 AACCATGTACTACAAACCTTATCCA
          1 AACCATGTACCACAAACCTTATCCA

                         *  *      
        917 AACCATGTACCACCAAGCTTATC
          1 AACCATGTACCACAAACCTTATC

        940 TATTGCACCA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  25   20  1.00

ACGTcount: A:0.38, C:0.33, G:0.06, T:0.23


Consensus pattern (25 bp):   
AACCATGTACCACAAACCTTATCCA
Done.