Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001236.1 Corchorus capsularis cultivar CVL-1 contig01236, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3630
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31


Found at i:2745 original size:7 final size:7

Alignment explanation


    Indices: 2733--2759  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

       2723 GCAAGAAGGG

                   
       2733 TCTCCAC
          1 TCTCCAC

                   
       2740 TCTCCAC
          1 TCTCCAC

                   
       2747 TCTCCAC
          1 TCTCCAC

                  
       2754 TCTCCA
          1 TCTCCA

       2760 AGCAGGCATC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.15, C:0.56, G:0.00, T:0.30


Consensus pattern (7 bp):   
TCTCCAC

Done.