Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012361.1 Corchorus capsularis cultivar CVL-1 contig12382, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24526

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
205--257
22
2.5
22
87
6
74
60
3
16
18
1.51
209--278
21
3.3
21
82
6
70
54
7
20
18
1.67
370--434
27
2.4
28
79
5
89
61
0
21
16
1.34
1538--1576
2
19.5
2
100
0
78
51
0
0
48
1.00
6337--6370
16
2.1
16
89
10
52
14
5
2
76
1.09
7950--8266
48
6.6
48
91
0
463
36
24
26
11
1.90
8761--8867
50
2.1
50
82
5
126
33
14
8
43
1.75
8800--8919
51
2.4
51
84
1
143
34
13
11
40
1.81
13632--13702
2
35.5
2
94
0
124
50
46
0
2
1.16
17418--17507
45
2.1
43
85
6
119
38
18
6
35
1.77
19169--19196
2
14.0
2
100
0
56
50
0
0
50
1.00
19349--19383
16
2.2
16
89
0
52
40
37
2
20
1.67
19525--19565
2
21.0
2
80
14
50
46
2
0
51
1.14
20706--20775
16
4.4
15
73
10
59
8
12
35
42
1.74
20936--20966
13
2.3
14
94
5
55
61
0
0
38
0.96
20938--20994
22
2.9
19
76
18
55
57
3
3
35
1.33
23077--23106
2
15.0
2
100
0
60
50
0
0
50
1.00
24378--24440
33
1.9
33
90
0
99
15
38
34
11
1.83
24434--24523
32
2.8
32
94
0
153
12
40
34
13
1.82

Tables:   1

The End!