Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01012363.1 Corchorus capsularis cultivar CVL-1 contig12384, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24912
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:11173 original size:22 final size:23
Alignment explanation
Indices: 11127--11174 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
11117 TATTTTATAT
* *
11127 TTTTTAATATAAATAATATTCAC
1 TTTTAAATATAAATAATAATCAC
*
11150 TTTTAAATATAAATATTAAT-AC
1 TTTTAAATATAAATAATAATCAC
11172 TTT
1 TTT
11175 AATTCAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (23 bp):
TTTTAAATATAAATAATAATCAC
Found at i:12845 original size:22 final size:22
Alignment explanation
Indices: 12820--12862 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
12810 AGATATTGGC
12820 ATAA-AAAGATGTCTTTATTTTT
1 ATAATAAAGA-GTCTTTATTTTT
12842 ATAATAAAGAGTCTTTATTTT
1 ATAATAAAGAGTCTTTATTTT
12863 ACAGTAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.49
Consensus pattern (22 bp):
ATAATAAAGAGTCTTTATTTTT
Found at i:12870 original size:21 final size:23
Alignment explanation
Indices: 12824--12872 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
12814 ATTGGCATAA
*
12824 AAAGATGTCTTTATTTTTATAAT
1 AAAGATGTCTTTATTTTTACAAT
*
12847 AAAGA-GTCTTTA-TTTTACAGT
1 AAAGATGTCTTTATTTTTACAAT
12868 AAAGA
1 AAAGA
12873 CATACCTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 12 0.50
22 7 0.29
23 5 0.21
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.43
Consensus pattern (23 bp):
AAAGATGTCTTTATTTTTACAAT
Found at i:15649 original size:18 final size:21
Alignment explanation
Indices: 15620--15659 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
15610 GGCAGCTAGG
15620 GTTTTGGAAGAA-AA-AGAAA
1 GTTTTGGAAGAAGAAGAGAAA
15639 GTTTT-GAAGAAGAAGAGAAA
1 GTTTTGGAAGAAGAAGAGAAA
15659 G
1 G
15660 GTTCACTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.32
19 7 0.37
20 6 0.32
ACGTcount: A:0.50, C:0.00, G:0.30, T:0.20
Consensus pattern (21 bp):
GTTTTGGAAGAAGAAGAGAAA
Found at i:16295 original size:37 final size:37
Alignment explanation
Indices: 16203--16889 Score: 829
Period size: 37 Copynumber: 18.9 Consensus size: 37
16193 TAAGTGAATA
* * *
16203 CAGTCAAA-GACTTAATTCAGGATAATTAAGTGAGAA-
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGT-AAAAG
* * *
16239 TAGTTGAA-GACTTAATTCAGGGTAGTTAAGTAAACA-
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAA-AG
* * * * *
16275 CAGTCAGAGAATTTAATTCAGGGAAATTAAGTAAACA-
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAA-AG
* *
16312 CAATTAAAGAACTTAATTCAGGGTAATTAAGTAAACA-
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAA-AG
* * *
16349 AAGTCAAAGAACTTAATTCAGGGTAATTAAGTAAAAG
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
* * *
16386 CAGTTAAAGAACTTAATTCACGGTAGTTAAGTAAATA-
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAA-AG
* *
16423 CAGTCAAAGAACTTAATTCAGGGTAATTAAGTAAAAG
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
* * * *
16460 CAGTTAATGGACTTAATTCATGATAATTAAGTAAAAA
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
*
16497 CAGTTAAAGGACTTAATTCAGGGAAATTAAGTAAAAG
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
*
16534 CAGTTAAAGGACTTAATTCTGGGTAATTAAGTAAAAG
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
* *
16571 CAG-TAAAGGACTTAATTCAGGGAAATTAAGTAAAAA
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
* *
16607 TAGTTAAAGGACTTAATTCAGGGAAATTAAGTAAAAG
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
*
16644 CAG-TAAAGGACTTAATTCTGGGTAATTAAGTAAAAG
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
*
16680 CAGTTAAAGGACTTAATTCTGGGTAATTAAGTAAAAG
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
*
16717 CAG-TAAAGGACTTAATTCTGGGTAATTAAGTAAAAG
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
*
16753 CAG-TAAAGGACTTAATTCAGGGAAATTAAGTAAAAG
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
*
16789 CAGTT-AAGTGACTTAATTCAGGGAAATTAAGTAAAAG
1 CAGTTAAAG-GACTTAATTCAGGGTAATTAAGTAAAAG
* *
16826 CAGTTAAAGGACTTAATTCA-GG-ACTTAA-T----T
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
*
16856 CAG-TAAAGGACTTAATTCAGGATAATTAAGTAAA
1 CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAA
16890 TTAGCAAAGA
Statistics
Matches: 579, Mismatches: 56, Indels: 33
0.87 0.08 0.05
Matches are distributed among these distances:
29 16 0.03
30 4 0.01
31 5 0.01
32 1 0.00
34 1 0.00
35 7 0.01
36 174 0.30
37 367 0.63
38 4 0.01
ACGTcount: A:0.44, C:0.09, G:0.20, T:0.27
Consensus pattern (37 bp):
CAGTTAAAGGACTTAATTCAGGGTAATTAAGTAAAAG
Found at i:16863 original size:29 final size:27
Alignment explanation
Indices: 16830--16889 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 27
16820 TAAAAGCAGT
*
16830 TAAAGGACTTAATTCAGGACTTAATTCAG
1 TAAAGGACTTAATTCAGGA--TAATTAAG
16859 TAAAGGACTTAATTCAGGATAATTAAG
1 TAAAGGACTTAATTCAGGATAATTAAG
16886 TAAA
1 TAAA
16890 TTAGCAAAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 11 0.37
29 19 0.63
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.30
Consensus pattern (27 bp):
TAAAGGACTTAATTCAGGATAATTAAG
Found at i:16877 original size:12 final size:12
Alignment explanation
Indices: 16833--16858 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16823 AAGCAGTTAA
16833 AGGACTTAATTC
1 AGGACTTAATTC
16845 AGGACTTAATTC
1 AGGACTTAATTC
16857 AG
1 AG
16859 TAAAGGACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (12 bp):
AGGACTTAATTC
Found at i:16922 original size:35 final size:33
Alignment explanation
Indices: 16879--16995 Score: 99
Period size: 36 Copynumber: 3.3 Consensus size: 33
16869 AATTCAGGAT
*
16879 AATTAAGTAAATTAGCAAAGACTTAATTTCACAAG
1 AATTAAGTAAATTAGCAAAGACTTAA-TCCA-AAG
* *
16914 AATTAAGTAAAATCATCAAAGACTTAATCCAAAG
1 AATTAAGT-AAATTAGCAAAGACTTAATCCAAAG
* * **
16948 ATGATTAAGTAAGATTAGACAAAAACTTAACCCAGGG
1 A--ATTAAGTAA-ATTAG-CAAAGACTTAATCCAAAG
*
16985 GATTAAGTAAA
1 AATTAAGTAAA
16996 GAAAATGACT
Statistics
Matches: 67, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
34 5 0.07
35 22 0.33
36 26 0.39
37 14 0.21
ACGTcount: A:0.50, C:0.12, G:0.14, T:0.25
Consensus pattern (33 bp):
AATTAAGTAAATTAGCAAAGACTTAATCCAAAG
Found at i:17403 original size:37 final size:37
Alignment explanation
Indices: 17002--17388 Score: 481
Period size: 37 Copynumber: 10.8 Consensus size: 37
16992 TAAAGAAAAT
* * *
17002 GACTTAATTTCAAGAAAGGAAATTAAGTAGAGTTAAG
1 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAG
* *
17039 GACTTAGTTCCAAGGTAGGGAATTAAGTAGAGTTAAG
1 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAG
* * *
17076 GACTTAGTTCCAAGGAAGGGAATTAAGTAGAATAAAG
1 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAG
* *
17113 GACTT-ATTCCAAGGAAGGGAATTAAGTATAGTAAAG
1 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAG
* *
17149 GACTTAATTTCAAGGAAGGAAATTAAGT--A---AAG
1 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAG
* *
17181 GACTTGATTCCAAGGAAGGGAATTAAGTAGAGTAAAG
1 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAG
* *
17218 GACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAG
1 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAG
*
17255 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAA
1 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAG
* *
17292 GACTTAATTTCAAGGAAGGAAATTAAGT--AG--AA-
1 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAG
* * *
17324 GATTTGATTCCAAGGAAGGGAATTAGGTAGAGTTAAG
1 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAG
* *
17361 GACTTAATTTCAAGGAAGGAAATTAAGT
1 GACTTAATTCCAAGGAAGGGAATTAAGT
17389 CAAGTCAGGG
Statistics
Matches: 304, Mismatches: 35, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
32 51 0.17
33 2 0.01
34 3 0.01
35 3 0.01
36 35 0.12
37 210 0.69
ACGTcount: A:0.42, C:0.07, G:0.26, T:0.25
Consensus pattern (37 bp):
GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAG
Found at i:17403 original size:143 final size:144
Alignment explanation
Indices: 16981--17388 Score: 592
Period size: 143 Copynumber: 2.8 Consensus size: 144
16971 AACTTAACCC
* * * * *
16981 AGGGGATTAAGTAAAGAAAATGACTTAATTTCAAGAAAGGAAATTAAGTAGAGTTAAGGACTT-A
1 AGGGAATTAAGTAGAGTAAAGGACTTAATTTCAAGGAAGGAAATTAAGT--AG--AAGGACTTGA
* * * * *
17045 GTTCCAAGGTAGGGAATTAAGTAGAGTTAAGGACTTAGTTCCAAGGAAGGGAATTAAGTAGAATA
62 -TTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTA
17110 AAGGACTT-ATTCCAAGGA
126 AAGGACTTAATTCCAAGGA
*
17128 AGGGAATTAAGTATAGTAAAGGACTTAATTTCAAGGAAGGAAATTAAGTA-AAGGACTTGATTCC
1 AGGGAATTAAGTAGAGTAAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAAGGACTTGATTCC
* *
17192 AAGGAAGGGAATTAAGTAGAGTAAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAGGA
66 AAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTAAAGGA
17257 CTTAATTCCAAGGA
131 CTTAATTCCAAGGA
*
17271 AGGGAATTAAGTAGAGTTAAA-GACTTAATTTCAAGGAAGGAAATTAAGTAGAA-GATTTGATTC
1 AGGGAATTAAGTAGAG-TAAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAAGGACTTGATTC
*
17334 CAAGGAAGGGAATTAGGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGT
65 CAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGT
17389 CAAGTCAGGG
Statistics
Matches: 241, Mismatches: 16, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
142 73 0.30
143 117 0.49
144 6 0.02
145 1 0.00
147 44 0.18
ACGTcount: A:0.43, C:0.07, G:0.26, T:0.25
Consensus pattern (144 bp):
AGGGAATTAAGTAGAGTAAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAAGGACTTGATTCC
AAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTAAAGGA
CTTAATTCCAAGGA
Found at i:17417 original size:69 final size:73
Alignment explanation
Indices: 17002--17407 Score: 507
Period size: 69 Copynumber: 5.6 Consensus size: 73
16992 TAAAGAAAAT
*
17002 GACTTAATTTCAAGAAAGGAAATTAAGTAGAGTTAAGGACTTAGTTCCAAGGTAGGGAATTAAGT
1 GACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAGGACTTAGTTCCAAGG-AGGGAATTAAGT
17067 AGAGTTAAG
65 AGAGTTAAG
* * * * *
17076 GACTTAGTTCCAAGGAAGGGAATTAAGTAGAATAAAGGACTTA-TTCCAAGGAAGGGAATTAAGT
1 GACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAGGACTTAGTTCCAAGG-AGGGAATTAAGT
* *
17140 ATAGTAAAG
65 AGAGTTAAG
17149 GACTTAATTTCAAGGAAGGAAATTAAGT--A---AAGGACTT-GATTCCAAGGAAGGGAATTAAG
1 GACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAGGACTTAG-TTCCAAGG-AGGGAATTAAG
*
17208 TAGAGTAAAG
64 TAGAGTTAAG
*
17218 GACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGGAAGGGAATTAAGT
1 GACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAGGACTTAGTTCCAAGG-AGGGAATTAAGT
*
17283 AGAGTTAAA
65 AGAGTTAAG
* *
17292 GACTTAATTTCAAGGAAGGAAATTAAGT--AG--AA-GA-TTTGATTCCAAGGAAGGGAATTAGG
1 GACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAGGACTTAG-TTCCAAGG-AGGGAATTAAG
17351 TAGAGTTAAG
64 TAGAGTTAAG
* *
17361 GACTTAATTTCAAGGAAGGAAATTAAGTCA-AGTCAGGGACTTAGTTC
1 GACTTAATTTCAAGGAAGGAAATTAAGT-AGAGTTAAGGACTTAGTTC
17408 AGGGTAATTA
Statistics
Matches: 295, Mismatches: 22, Indels: 30
0.85 0.06 0.09
Matches are distributed among these distances:
68 10 0.03
69 115 0.39
70 2 0.01
71 4 0.01
72 2 0.01
73 53 0.18
74 106 0.36
75 3 0.01
ACGTcount: A:0.41, C:0.08, G:0.26, T:0.25
Consensus pattern (73 bp):
GACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAGGACTTAGTTCCAAGGAGGGAATTAAGTA
GAGTTAAG
Found at i:17428 original size:37 final size:36
Alignment explanation
Indices: 17395--17528 Score: 157
Period size: 37 Copynumber: 3.7 Consensus size: 36
17385 AAGTCAAGTC
*
17395 AGGGACTTAGTTCAGGGTAATTAAGTAGCGTCAATAA
1 AGGGACTTAATTCAGGGTAATTAAGTAGCGTCAAT-A
* *
17432 AGGGACTTAATTCAGGGTAATTAAGTAGTGCCAATA
1 AGGGACTTAATTCAGGGTAATTAAGTAGCGTCAATA
* * *
17468 AAGG-CTTAATTCAGGGTAATTAAGTGGAGTCAATGA
1 AGGGACTTAATTCAGGGTAATTAAGTAGCGTCAAT-A
*
17504 AAGG-CTTAATTC-GTGGTAATTAAGT
1 AGGGACTTAATTCAG-GGTAATTAAGT
17529 GGAGTGAATA
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
35 28 0.32
36 28 0.32
37 32 0.36
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (36 bp):
AGGGACTTAATTCAGGGTAATTAAGTAGCGTCAATA
Found at i:17514 original size:36 final size:35
Alignment explanation
Indices: 17400--17541 Score: 178
Period size: 36 Copynumber: 4.0 Consensus size: 35
17390 AAGTCAGGGA
* *
17400 CTTAGTTCAGGGTAATTAAGTAGCGTCAATAAAGGG
1 CTTAATTCAGGGTAATTAAGTAGAGTCAATAAA-GG
* *
17436 ACTTAATTCAGGGTAATTAAGTAGTGCCAATAAAGG
1 -CTTAATTCAGGGTAATTAAGTAGAGTCAATAAAGG
*
17472 CTTAATTCAGGGTAATTAAGTGGAGTCAATGAAAGG
1 CTTAATTCAGGGTAATTAAGTAGAGTCAAT-AAAGG
* *
17508 CTTAATTC-GTGGTAATTAAGTGGAGTGAATAAAG
1 CTTAATTCAG-GGTAATTAAGTAGAGTCAATAAAG
17542 AACTTAATCT
Statistics
Matches: 96, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
35 32 0.33
36 34 0.35
37 30 0.31
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (35 bp):
CTTAATTCAGGGTAATTAAGTAGAGTCAATAAAGG
Found at i:19685 original size:23 final size:24
Alignment explanation
Indices: 19659--19717 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
19649 TCACAGCTGC
*
19659 TTTTCAACTTACAGCCACATTT-T
1 TTTTCAACTCACAGCCACATTTGT
* * *
19682 TTTTCATCTCAGAGTCACATTTGT
1 TTTTCAACTCACAGCCACATTTGT
*
19706 TTTTCATCTCAC
1 TTTTCAACTCAC
19718 CGGAGTCAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 18 0.60
24 12 0.40
ACGTcount: A:0.22, C:0.25, G:0.07, T:0.46
Consensus pattern (24 bp):
TTTTCAACTCACAGCCACATTTGT
Found at i:20287 original size:19 final size:18
Alignment explanation
Indices: 20263--20298 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
20253 GAAGATTTTC
20263 TTGAAGATAATTTGAAGAT
1 TTGAAGATAA-TTGAAGAT
*
20282 TTGAAGATCATTGAAGA
1 TTGAAGATAATTGAAGA
20299 ATTATTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (18 bp):
TTGAAGATAATTGAAGAT
Found at i:24315 original size:12 final size:12
Alignment explanation
Indices: 24289--24322 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
24279 AGCCAGCCCT
*
24289 AAAAAAAACAAA
1 AAAAAAAACGAA
24301 AAAAGAAAACGAA
1 AAAA-AAAACGAA
24314 AAAAAAAAC
1 AAAAAAAAC
24323 TTAACCCGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.85, C:0.09, G:0.06, T:0.00
Consensus pattern (12 bp):
AAAAAAAACGAA
Found at i:24886 original size:23 final size:23
Alignment explanation
Indices: 24860--24906 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
24850 TGCAACTTAT
24860 ATTATTATAACATAAAATCAAGA
1 ATTATTATAACATAAAATCAAGA
*
24883 ATTATTATAACATGAAATCAAGA
1 ATTATTATAACATAAAATCAAGA
24906 A
1 A
24907 CAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (23 bp):
ATTATTATAACATAAAATCAAGA
Done.