Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012369.1 Corchorus capsularis cultivar CVL-1 contig12390, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15400

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
569--1128
285
2.0
283
85
5
774
35
15
13
36
1.86
238--1337
610
1.8
602
84
4
1525
35
14
14
36
1.86
1360--1457
43
2.2
44
89
7
155
30
12
12
44
1.78
1050--1743
368
1.9
367
86
3
982
34
13
15
37
1.87
1418--2523
316
3.5
312
81
6
1124
35
14
14
35
1.87
1418--2523
317
3.5
318
80
7
1240
35
14
14
35
1.87
2631--4855
644
3.5
637
81
7
2500
32
13
16
37
1.87
4851--5890
327
3.2
317
81
8
1100
33
13
15
36
1.88
5851--5928
38
2.1
38
100
0
156
41
15
7
35
1.76
13064--13117
26
2.1
26
82
6
65
40
9
7
42
1.65
13726--13767
12
3.3
12
86
6
57
0
16
0
83
0.65

Tables:   1

The End!