Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001237.1 Corchorus capsularis cultivar CVL-1 contig01237, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4006
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.39


Found at i:3364 original size:26 final size:27

Alignment explanation


    Indices: 3282--3365  Score: 143
    Period size: 27  Copynumber: 3.1  Consensus size: 27

       3272 GTTTGTGTAT

                                       
       3282 TTCACTTTTCTGCTTTTATTTCTCAAG
          1 TTCACTTTTCTGCTTTTATTTCTCAAG

                                       
       3309 TTCACTTTTCTGCTTTTATTTCTCAAG
          1 TTCACTTTTCTGCTTTTATTTCTCAAG

                          *   *        
       3336 TTCACTTTTCTGC-ATTAATTCTCAAG
          1 TTCACTTTTCTGCTTTTATTTCTCAAG

                
       3362 TTCA
          1 TTCA

       3366 AAATGTTGAT


Statistics
Matches: 55,  Mismatches: 2, Indels: 1
        0.95            0.03        0.02

Matches are distributed among these distances:
  26   15  0.27
  27   40  0.73

ACGTcount: A:0.18, C:0.23, G:0.07, T:0.52


Consensus pattern (27 bp):   
TTCACTTTTCTGCTTTTATTTCTCAAG
Done.