Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012372.1 Corchorus capsularis cultivar CVL-1 contig12393, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53567

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2346--2404
25
2.4
25
83
5
77
38
1
23
35
1.65
14596--14623
14
2.0
14
100
0
56
50
7
0
42
1.30
15580--15750
87
1.9
87
82
5
209
22
15
33
28
1.95
15774--15919
48
3.0
48
91
3
229
12
16
47
23
1.81
15780--15946
48
3.5
50
85
6
143
12
17
43
26
1.84
19364--19407
21
2.0
21
86
13
61
36
0
54
9
1.32
24981--25015
18
1.9
18
100
0
70
34
28
5
31
1.81
32500--32565
32
2.1
32
85
0
87
34
10
7
46
1.67
33703--33768
29
2.3
29
86
5
89
50
7
7
34
1.59
34722--34768
22
2.1
22
96
0
85
42
4
6
46
1.48
34722--34764
11
3.9
11
90
0
68
41
4
6
46
1.51
38513--38658
31
4.7
31
81
2
150
20
22
23
33
1.97
42647--42700
22
2.5
22
84
6
65
38
9
11
40
1.73
42900--42993
22
4.2
22
81
5
91
38
14
7
39
1.75
42911--43181
22
12.5
22
74
10
177
33
15
8
42
1.77
42731--43162
44
9.9
44
70
11
185
35
16
9
38
1.81
42911--43181
45
6.3
43
74
11
214
33
15
8
42
1.77
43128--43224
42
2.4
42
77
10
103
35
16
8
40
1.78
43274--43339
22
3.2
21
80
6
73
37
9
4
48
1.55
43288--43515
22
10.4
22
73
12
157
34
13
9
42
1.76
43606--43657
22
2.3
23
84
12
65
38
19
7
34
1.80
43714--43853
22
6.3
22
75
9
113
40
19
9
30
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44019--44056
19
2.0
20
85
15
53
63
2
5
28
1.30
47171--47226
27
2.1
27
86
0
76
23
19
32
25
1.98
52731--52758
2
14.0
2
100
0
56
50
0
0
50
1.00
52830--53307
238
2.0
238
93
2
818
35
16
12
34
1.87

Tables:   1

The End!