Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012375.1 Corchorus capsularis cultivar CVL-1 contig12396, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51186

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--2496
331
7.6
331
83
6
2873
34
16
15
33
1.90
3981--4077
33
2.9
32
83
11
124
17
39
30
12
1.87
3999--4049
17
3.1
17
71
5
50
19
35
35
9
1.85
4380--4423
21
2.1
21
83
8
54
18
31
9
40
1.81
4492--4529
19
2.0
20
89
5
60
57
0
0
42
0.98
4535--4609
32
2.3
33
86
2
98
13
42
36
8
1.73
4548--4615
33
2.1
32
91
2
109
10
35
44
10
1.73
4566--4636
33
2.2
33
82
12
85
12
35
40
11
1.79
13829--13857
8
3.6
8
100
0
58
48
13
0
37
1.43
15487--15519
2
16.5
2
93
0
57
48
0
3
48
1.17
15523--15574
27
2.0
26
92
3
86
25
3
21
50
1.65
16446--16501
3
18.3
3
81
3
58
35
28
1
33
1.68
22877--22901
2
12.5
2
100
0
50
52
0
0
48
1.00
26284--26312
2
14.5
2
100
0
58
48
0
0
51
1.00
38329--38432
51
2.1
50
98
1
199
56
11
6
25
1.59
45389--45431
23
1.9
22
90
4
68
0
13
4
81
0.84
48817--49015
99
2.0
99
97
0
371
42
25
9
22
1.83

Tables:   1

The End!