Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012378.1 Corchorus capsularis cultivar CVL-1 contig12399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42842

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
610--639
2
15.0
2
92
0
51
46
0
3
50
1.18
1377--1434
17
3.2
17
73
21
64
41
12
1
44
1.51
1610--1639
2
15.0
2
100
0
60
50
0
0
50
1.00
2030--2067
11
3.5
11
85
10
51
57
2
0
39
1.12
4934--5020
2
45.5
2
74
21
71
42
4
2
50
1.35
12538--12570
8
4.2
8
84
7
50
0
15
0
84
0.61
12538--12569
15
2.1
15
94
0
55
0
15
0
84
0.63
15470--15500
3
10.3
3
100
0
62
32
0
32
35
1.58
16560--16620
21
2.9
21
85
0
86
31
9
18
40
1.83
28411--28440
1
30.0
1
100
0
60
0
0
0
100
0.00
30886--31047
31
5.5
31
74
12
126
18
22
25
33
1.97
34650--34676
13
2.1
13
100
0
54
55
0
7
37
1.28

Tables:   1

The End!