Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012379.1 Corchorus capsularis cultivar CVL-1 contig12400, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19405

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
273--680
201
2.0
201
83
3
527
35
13
13
37
1.84
479--4258
323
11.7
322
82
6
4455
34
14
16
35
1.88
4002--4517
260
2.0
259
90
1
820
35
12
14
37
1.84
3680--4833
582
2.0
580
82
5
1420
33
14
15
36
1.88
4264--5051
321
2.5
323
83
5
1022
33
14
16
36
1.89
4793--6000
292
3.9
295
78
14
1148
32
14
16
36
1.89
5546--6661
581
1.9
578
84
4
1476
34
14
15
35
1.88
6085--7198
320
3.5
320
84
3
1368
33
14
15
36
1.88
7186--7224
18
2.2
17
90
4
60
71
2
2
23
1.10
7206--7239
11
3.1
11
88
12
52
64
2
8
23
1.36
12120--12187
29
2.3
30
84
2
84
45
13
22
19
1.84
12135--12195
29
2.1
29
81
0
68
52
14
16
16
1.75
15510--15542
16
2.1
16
100
0
66
18
0
6
75
1.00
15640--15681
21
2.0
21
100
0
84
14
23
0
61
1.32
16288--16322
2
17.0
2
94
5
61
48
0
2
48
1.16
16287--16320
17
2.0
17
100
0
68
47
0
5
47
1.26
17837--18038
106
1.9
104
88
6
300
25
13
11
49
1.76
18465--18519
26
2.1
26
82
0
65
40
12
3
43
1.60

Tables:   1

The End!