Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012381.1 Corchorus capsularis cultivar CVL-1 contig12402, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6576
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29


Found at i:3703 original size:15 final size:15

Alignment explanation


    Indices: 3680--3713  Score: 59
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       3670 CCCTTGGCCC

                *          
       3680 ATTATAATTTTCCAT
          1 ATTAGAATTTTCCAT

                           
       3695 ATTAGAATTTTCCAT
          1 ATTAGAATTTTCCAT

                
       3710 ATTA
          1 ATTA

       3714 AAAATAGGTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.35, C:0.12, G:0.03, T:0.50


Consensus pattern (15 bp):   
ATTAGAATTTTCCAT

Found at i:6364 original size:2 final size:2

Alignment explanation


    Indices: 6357--6382  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       6347 ACGAACCACC

                                                  
       6357 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA

       6383 CTACTATCAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.