Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012384.1 Corchorus capsularis cultivar CVL-1 contig12405, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30220

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2642--2671
7
4.3
7
91
0
51
83
3
0
13
0.77
17541--17586
2
24.5
2
82
12
62
52
0
0
47
1.00
20653--20701
22
2.2
22
82
7
55
30
16
4
48
1.64
20736--20793
29
2.0
30
82
3
73
36
15
13
34
1.87
20836--20950
22
5.1
22
84
6
97
38
15
8
37
1.79
20888--20972
23
3.7
23
84
1
100
37
14
7
41
1.73
20849--20974
22
5.6
22
78
7
94
37
15
8
38
1.78
20849--20972
45
2.8
45
80
10
130
37
14
8
38
1.77
20842--21030
22
8.8
22
74
12
79
34
15
9
40
1.80
21085--21135
19
2.6
20
90
6
86
25
17
11
45
1.83
21217--21431
22
9.7
22
71
13
122
33
12
9
44
1.74
21241--21470
22
10.5
22
73
9
123
32
13
10
43
1.78
21493--21547
22
2.6
21
77
11
58
38
16
5
40
1.72
21508--21558
22
2.3
22
82
0
66
41
19
7
31
1.80
21665--21804
22
6.3
22
75
11
97
39
19
9
32
1.83
21665--21806
68
2.1
66
80
5
151
39
19
9
31
1.83
21973--22015
19
2.2
20
84
16
54
62
0
6
30
1.21
22152--22216
30
2.2
31
88
5
98
56
12
15
15
1.67
22278--22329
26
2.0
27
84
3
70
44
1
11
42
1.51
22317--22382
31
2.1
31
86
5
89
48
3
19
28
1.64

Tables:   1

The End!