Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012385.1 Corchorus capsularis cultivar CVL-1 contig12406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123429

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1011--1087
29
2.6
29
81
2
82
19
27
14
38
1.90
6720--6767
19
2.3
21
86
10
64
41
25
14
18
1.88
6687--6787
53
1.9
53
85
0
139
37
25
18
17
1.93
6739--6835
31
3.2
31
82
2
108
31
25
21
20
1.98
8780--8817
19
2.0
20
85
15
53
68
5
15
10
1.36
14692--14719
2
14.0
2
100
0
56
50
0
0
50
1.00
19981--20007
2
13.5
2
100
0
54
51
0
0
48
1.00
23758--23802
22
2.0
24
91
8
76
55
13
24
6
1.62
31547--31580
15
2.2
16
89
5
52
88
0
11
0
0.52
44950--45028
35
2.3
35
93
2
133
34
21
7
36
1.82
53473--53620
31
5.1
31
73
14
107
17
20
25
35
1.95
53787--53831
21
2.1
21
100
0
90
22
28
8
40
1.84
69394--69488
50
1.9
50
97
0
181
25
12
22
40
1.89
85273--85304
2
16.0
2
93
0
55
46
0
3
50
1.17
91101--91134
2
17.5
2
93
6
61
50
0
0
50
1.00
95266--95302
2
19.0
2
94
5
67
51
0
0
48
1.00
99154--99427
109
2.5
109
90
4
408
49
2
10
37
1.49
99607--99643
3
12.3
3
100
0
74
32
0
0
67
0.91
101389--101416
2
14.0
2
100
0
56
50
0
0
50
1.00
103103--103141
13
2.9
13
88
3
60
20
33
7
38
1.81
103132--103217
41
2.1
41
86
0
118
37
18
13
30
1.90
105750--105844
31
3.2
31
65
14
81
21
22
20
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105708--105880
59
2.9
59
93
0
285
21
23
19
35
1.96
110302--110339
2
19.0
2
100
0
76
50
0
0
50
1.00
120511--120619
33
3.3
33
87
7
159
11
27
41
20
1.86
120513--120598
16
5.2
16
66
10
57
9
27
41
20
1.83
121709--121737
1
29.0
1
100
0
58
0
0
0
100
0.00

Tables:   1

The End!