Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012394.1 Corchorus capsularis cultivar CVL-1 contig12415, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84629

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
372--405
13
2.7
13
86
4
52
52
0
35
11
1.38
3471--3513
20
2.2
20
100
0
86
32
13
0
53
1.41
13906--13957
2
25.5
2
88
3
77
48
3
1
46
1.31
14442--14480
18
2.2
18
100
0
78
17
10
20
51
1.74
15779--15891
53
2.1
52
87
9
158
17
10
20
51
1.75
29819--29852
13
2.6
13
95
0
59
0
20
0
79
0.73
30411--30451
21
1.9
22
85
5
57
24
2
24
48
1.63
42448--42517
31
2.3
31
85
5
88
17
22
22
37
1.94
46018--46140
60
2.1
59
88
10
180
39
9
20
30
1.85
46049--46163
59
1.9
58
81
11
135
41
9
18
30
1.82
65014--65043
15
2.0
15
100
0
60
40
0
6
53
1.27
65711--65744
6
5.7
6
96
0
59
2
17
0
79
0.86
65699--65745
18
2.6
18
83
10
60
2
23
0
74
0.93
80650--80877
84
2.7
84
82
7
266
24
9
24
42
1.83
80650--80886
85
2.8
83
82
8
266
24
9
24
42
1.84
80650--80889
41
5.7
41
79
9
211
23
9
25
42
1.83
83436--83484
24
2.0
24
100
0
98
20
16
28
34
1.94
84366--84416
2
26.0
2
81
18
63
50
3
0
45
1.20

Tables:   1

The End!