Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012395.1 Corchorus capsularis cultivar CVL-1 contig12416, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97683

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2717--2763
6
7.8
6
80
15
53
0
0
12
87
0.55
2714--2761
5
9.8
5
83
16
57
0
0
12
87
0.54
2714--2761
20
2.4
20
100
0
96
0
0
12
87
0.54
3081--3113
3
11.0
3
100
0
66
66
0
0
33
0.92
5180--5546
139
2.6
138
84
8
463
43
8
11
36
1.72
5858--6189
142
2.4
140
91
2
533
43
9
9
38
1.69
24936--25019
42
2.0
42
92
0
141
34
10
7
47
1.66
26288--26354
31
2.2
31
86
5
93
50
11
16
20
1.76
26486--26562
31
2.5
31
95
0
136
36
19
9
35
1.84
26486--26620
31
4.4
29
82
3
117
33
18
11
37
1.86
26670--26704
3
11.7
3
100
0
70
65
0
0
34
0.93
27608--27717
31
3.6
31
80
4
107
41
13
15
29
1.85
27836--27902
31
2.2
31
89
5
102
20
17
11
49
1.79
38451--38496
1
46.0
1
100
0
92
0
0
0
100
0.00
45037--45091
5
10.6
5
85
14
76
58
1
0
40
1.09
49277--49318
17
2.4
18
84
4
59
50
7
0
42
1.30
49292--49329
7
5.6
7
84
6
51
47
2
0
50
1.15
49278--49418
20
7.1
20
73
16
82
46
6
0
46
1.28
50576--50613
2
19.0
2
100
0
76
50
0
0
50
1.00
67632--67662
16
1.9
16
93
0
53
16
22
16
45
1.85
71105--71186
30
2.7
31
78
3
94
35
21
23
19
1.96
75309--75351
22
2.0
22
81
9
52
41
11
6
39
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75483--75886
22
18.4
22
75
9
222
36
16
10
36
1.83
75676--75760
23
3.7
23
81
7
93
37
12
8
41
1.74
75835--75886
20
2.6
20
100
0
104
26
19
11
42
1.85
75968--76138
22
7.8
22
74
8
125
32
10
11
45
1.74
76121--76182
25
2.7
24
80
12
67
32
9
14
43
1.78
76227--76340
22
5.2
21
72
14
79
35
19
8
35
1.83
76238--76340
44
2.3
43
80
9
111
35
18
9
35
1.84
76371--76416
22
2.0
25
83
12
62
47
21
4
26
1.69
76376--76582
22
9.3
21
75
11
137
38
17
9
34
1.82
76376--76582
66
3.1
66
78
8
170
38
17
9
34
1.82
76747--76784
19
2.0
20
85
15
53
63
2
5
28
1.30
77461--77530
30
2.3
31
87
5
97
48
4
15
31
1.65
85243--85285
1
43.0
1
100
0
86
0
0
0
100
0.00
93271--93335
30
2.3
30
81
7
82
29
30
12
27
1.93
96717--96776
31
1.9
32
90
6
97
33
16
3
46
1.64
97060--97169
22
4.9
22
71
4
76
34
10
18
37
1.84
97215--97265
22
2.3
22
74
16
52
37
11
19
31
1.88
97296--97602
22
13.8
22
67
20
97
41
9
14
34
1.77
97461--97627
44
3.8
44
76
8
144
43
10
13
33
1.77

Tables:   1

The End!