Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012396.1 Corchorus capsularis cultivar CVL-1 contig12417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30279

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1910--1952
16
2.7
16
81
0
50
34
0
9
55
1.32
2337--2402
14
4.4
14
74
22
62
25
12
1
60
1.40
2339--2380
18
2.3
18
84
8
50
28
16
2
52
1.56
5400--5464
29
2.2
28
82
12
78
20
12
18
49
1.79
12784--12817
2
17.0
2
100
0
68
50
0
0
50
1.00
15584--16573
99
10.0
99
92
1
1497
27
23
21
27
1.99
16240--16406
51
3.3
51
65
20
143
29
24
19
25
1.98
16104--16355
48
5.1
48
62
22
128
27
24
19
28
1.98
16941--17368
232
1.8
233
88
2
664
26
24
17
31
1.97
18724--18975
98
2.5
99
92
3
427
21
26
16
36
1.94
18921--19115
66
3.0
65
92
5
322
16
26
17
38
1.91
19320--19437
43
2.7
43
87
5
159
13
27
15
44
1.84
20483--20587
34
3.2
34
89
4
162
22
27
22
26
1.99
20919--20962
20
2.2
20
87
0
61
29
43
9
18
1.80
22036--22114
31
2.6
30
74
9
72
36
11
29
22
1.89
23898--23923
6
4.3
6
100
0
52
84
0
0
15
0.62
26044--26103
29
2.0
30
96
3
113
46
20
13
20
1.83
26588--27377
392
2.0
392
100
0
1580
28
18
17
34
1.94
27249--27526
147
1.9
146
83
4
362
33
19
20
27
1.96

Tables:   1

The End!