Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012397.1 Corchorus capsularis cultivar CVL-1 contig12418, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80968

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5443--5503
24
2.3
26
81
16
81
37
31
0
31
1.58
5569--5679
34
3.1
33
76
19
114
45
11
13
29
1.79
12881--12918
1
38.0
1
100
0
76
100
0
0
0
0.00
13822--13859
17
2.2
17
90
0
58
36
18
21
23
1.95
18886--18938
24
2.2
24
93
0
88
1
1
49
47
1.23
18901--18957
3
19.0
3
85
0
60
0
1
56
42
1.10
20895--21024
65
2.0
64
96
1
242
40
13
13
33
1.84
27611--27680
27
2.6
27
86
0
86
34
41
8
15
1.78
27879--27955
16
5.3
14
69
25
52
53
3
2
40
1.33
28003--28045
14
3.2
13
80
9
50
65
4
2
27
1.25
28100--28233
32
4.2
32
81
4
139
9
38
37
14
1.80
28184--28284
32
3.2
32
87
4
134
12
36
32
17
1.88
28401--28440
20
2.0
20
95
0
71
27
20
5
47
1.70
29522--29558
18
2.1
18
100
0
74
21
0
10
67
1.21
36222--36277
2
28.0
2
92
0
94
46
0
3
50
1.19
38768--38829
31
2.0
31
83
3
79
24
16
1
58
1.47
39804--39840
18
2.1
18
94
0
65
27
24
21
27
1.99
40492--40542
25
2.1
24
85
10
68
37
5
0
56
1.23
41721--41745
2
12.5
2
100
0
50
48
0
0
52
1.00
53911--53946
2
17.5
2
94
5
63
47
0
2
50
1.15
63138--63325
94
2.0
94
100
0
376
38
19
12
29
1.89
70633--70662
15
2.0
15
93
0
51
70
0
30
0
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71050--71075
4
6.5
4
100
0
52
53
0
0
46
1.00
72373--72402
14
2.1
14
93
0
51
13
10
10
66
1.44
73371--73420
25
2.0
26
84
11
68
50
2
18
30
1.58

Tables:   1

The End!