genome.fa.s12399.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012399.1 Corchorus capsularis cultivar CVL-1 contig12420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80040

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11264--11298	2	17.5	2	93	0	61	51	2	0	45	1.16
17239--17270	15	2.1	15	94	0	55	0	3	9	87	0.64
18878--18904	1	27.0	1	100	0	54	0	0	0	100	0.00
20216--20252	2	19.5	2	83	10	51	48	0	0	51	1.00
22664--22762	20	4.8	21	85	6	121	23	13	14	49	1.78
22664--22762	42	2.4	41	89	1	153	23	13	14	49	1.78
30990--31034	21	2.2	20	88	7	65	51	20	15	13	1.76
31433--31511	38	2.1	39	97	2	151	40	7	10	41	1.67
32469--33027	281	2.0	283	89	2	854	37	15	14	32	1.88
32751--37743	332	15.2	332	84	4	6230	37	15	14	32	1.88
32751--37714	661	7.5	662	87	3	6068	37	15	14	32	1.88
38049--38078	1	30.0	1	100	0	60	0	0	0	100	0.00
39824--40109	41	7.2	41	90	7	455	30	27	8	33	1.86
39873--40013	20	6.9	20	64	13	72	32	26	7	32	1.85
40177--40400	122	1.8	122	90	1	360	42	21	22	13	1.88
47235--47293	30	2.0	30	93	0	100	25	13	22	38	1.90
47952--48172	51	4.3	51	79	6	216	20	33	12	33	1.90
52549--52604	22	2.6	22	86	8	71	30	7	8	53	1.59
52624--52678	22	2.4	23	81	3	67	38	18	12	30	1.88
52708--52763	22	2.5	22	82	2	67	41	10	10	37	1.75
52728--52853	22	5.6	22	77	4	83	38	13	7	39	1.74
52728--52831	46	2.3	45	81	3	120	40	13	7	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52861--53028	22	7.6	22	72	16	80	33	14	10	41	1.80
52920--53021	44	2.3	42	79	12	116	39	10	10	39	1.75
53013--53078	19	3.5	18	85	8	87	25	19	10	43	1.83
53181--53423	22	11.3	22	69	14	123	33	13	10	42	1.78
53156--53347	44	4.4	43	77	7	165	34	11	10	43	1.75
53156--53322	88	1.9	88	81	4	203	33	11	11	43	1.78
53316--53353	21	1.9	19	85	15	51	39	7	5	47	1.55
53181--53539	22	16.3	22	67	18	101	34	14	10	40	1.79
53603--53765	22	7.3	22	79	8	100	38	19	9	32	1.84
53610--53740	44	3.0	43	83	6	147	38	16	10	34	1.84
53657--53741	22	3.9	22	93	0	143	35	16	12	35	1.87
53603--53741	22	6.2	22	80	9	129	38	18	10	33	1.84
53611--53764	44	3.5	44	79	10	111	38	17	10	33	1.84
53846--53913	31	2.2	32	86	10	104	47	4	16	32	1.66
53854--53919	31	2.1	32	91	5	109	46	4	19	28	1.69
54095--54138	18	2.4	18	82	10	54	45	4	22	27	1.72
57564--57590	14	1.9	14	100	0	54	51	7	18	22	1.70
62404--62432	14	2.0	15	93	6	51	44	20	6	27	1.77
64073--64112	20	2.0	20	90	0	62	40	20	20	20	1.92
67598--67653	3	18.7	3	80	7	60	1	37	1	58	1.19
67650--67689	18	2.2	18	95	0	71	12	40	5	42	1.64
69499--69544	22	2.2	21	85	11	60	39	23	15	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69466--69566	51	1.9	51	84	4	130	36	26	18	17	1.94
73093--73141	24	2.0	25	96	4	91	44	30	12	12	1.78
74033--74092	20	3.1	19	81	11	68	40	3	0	56	1.16
74037--74092	21	2.7	19	78	13	58	39	3	0	57	1.16
75578--75658	29	2.7	29	88	3	108	25	22	12	39	1.89
76350--76406	28	2.0	28	82	0	69	40	15	19	24	1.90
77534--77618	42	2.0	42	88	0	125	51	9	15	23	1.72
77771--77827	3	19.0	3	100	0	114	66	0	0	33	0.92

Tables:   1

The End!