Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012400.1 Corchorus capsularis cultivar CVL-1 contig12421, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17943
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:8684 original size:38 final size:38

Alignment explanation


    Indices: 8633--8707  Score: 132
    Period size: 38  Copynumber: 2.0  Consensus size: 38

       8623 CAAGATTGAT

                                   *  *           
       8633 AAGAAAATTCAATCCAAAATATCCAACTCTTTCTAGTA
          1 AAGAAAATTCAATCCAAAATATCAAAATCTTTCTAGTA

                                                 
       8671 AAGAAAATTCAATCCAAAATATCAAAATCTTTCTAGT
          1 AAGAAAATTCAATCCAAAATATCAAAATCTTTCTAGT

       8708 GAATCAACAG


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  38   35  1.00

ACGTcount: A:0.47, C:0.19, G:0.05, T:0.29


Consensus pattern (38 bp):   
AAGAAAATTCAATCCAAAATATCAAAATCTTTCTAGTA

Found at i:15054 original size:1 final size:1

Alignment explanation


    Indices: 15048--15072  Score: 50
    Period size: 1  Copynumber: 25.0  Consensus size: 1

      15038 ACTTCAAGCC

                                     
      15048 AAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAA

      15073 GGAAGAAGAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   24  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Done.