Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012406.1 Corchorus capsularis cultivar CVL-1 contig12427, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41218

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
739--766
2
14.0
2
100
0
56
50
0
0
50
1.00
5283--5315
17
1.9
17
100
0
66
54
12
0
33
1.37
19376--19437
32
1.9
32
93
0
106
24
17
19
38
1.93
19465--19787
158
2.0
163
89
4
494
31
8
17
42
1.80
19830--19869
21
2.0
20
85
5
53
47
2
10
40
1.50
22448--22486
20
2.0
19
85
14
53
28
2
35
33
1.71
26954--27249
109
2.7
109
91
4
450
50
1
10
37
1.48
27119--27160
17
2.6
16
78
14
50
45
0
9
45
1.36
27823--27923
29
3.4
29
81
9
114
19
27
15
36
1.93
28085--28161
29
2.6
30
83
2
102
36
15
31
16
1.91
35457--35536
31
2.7
30
79
11
76
41
18
18
21
1.91
37166--37257
26
3.5
26
87
0
139
40
30
2
27
1.68
38869--39012
47
3.1
46
87
4
211
52
0
11
36
1.37
38936--39089
74
2.1
74
92
0
254
50
0
8
41
1.33
39005--39270
44
6.1
44
84
5
315
51
2
9
37
1.48
38890--39266
118
3.0
121
82
8
404
50
1
9
37
1.46
41001--41049
23
2.1
23
96
0
89
40
24
16
18
1.90
41110--41140
12
2.6
12
100
0
62
83
0
16
0
0.64

Tables:   1

The End!