Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012411.1 Corchorus capsularis cultivar CVL-1 contig12432, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15749

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1692--1797
33
3.3
33
86
3
146
43
20
10
25
1.84
1822--1915
33
2.8
33
78
0
107
42
21
10
25
1.85
4590--6516
336
5.8
332
90
2
2950
35
15
15
33
1.89
4593--6516
667
2.9
667
92
1
3162
35
15
15
33
1.89
6255--6774
258
2.0
261
90
3
816
34
15
16
34
1.90
6517--9571
332
9.2
331
82
5
3334
35
15
14
33
1.89
6517--9571
665
4.6
664
81
6
3400
35
15
14
33
1.89
10124--10228
31
3.5
30
85
5
131
34
20
12
33
1.90
10124--10209
29
2.9
30
89
3
120
37
20
10
31
1.87
10710--10787
32
2.6
27
75
21
75
30
15
7
46
1.74
10727--10790
32
2.0
32
93
0
110
29
14
7
48
1.71
11475--11629
78
2.0
78
93
0
265
32
11
13
41
1.80
11707--11907
98
2.1
97
94
2
350
45
19
10
23
1.82
15108--15159
24
2.2
24
92
0
86
23
32
7
36
1.83
15646--15678
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!