Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012413.1 Corchorus capsularis cultivar CVL-1 contig12434, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60114

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
280--357
38
2.1
38
83
11
99
61
8
15
14
1.56
1179--1224
23
2.0
23
95
0
83
39
10
0
50
1.38
1266--1324
30
2.0
30
83
6
77
47
5
15
32
1.67
5135--5392
129
2.0
129
95
0
462
25
21
18
34
1.96
9741--9767
1
27.0
1
100
0
54
100
0
0
0
0.00
18681--18837
74
2.1
74
90
2
244
22
26
8
42
1.82
20058--20228
88
1.9
88
84
4
229
34
11
21
33
1.88
32920--32969
22
2.2
23
82
10
59
62
16
4
18
1.48
32917--32969
23
2.4
23
79
17
60
60
18
3
16
1.51
33201--33228
5
5.6
5
100
0
56
60
0
0
39
0.97
34611--34651
15
2.7
15
75
24
50
58
31
0
9
1.31
39347--39470
61
2.0
61
100
0
248
25
16
14
43
1.86
49724--49832
56
1.9
58
92
3
186
44
9
4
42
1.57
50814--50860
25
2.0
24
83
8
60
31
17
6
44
1.73
57223--57257
16
2.2
16
94
0
61
11
11
37
40
1.77
59553--59625
29
2.5
31
80
8
89
19
17
15
47
1.82

Tables:   1

The End!