Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012419.1 Corchorus capsularis cultivar CVL-1 contig12440, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36506

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--486
175
2.8
175
95
2
864
46
6
12
34
1.69
11619--11673
3
18.7
3
96
3
103
65
0
0
34
0.93
18892--18929
16
2.4
16
91
8
60
42
7
10
39
1.69
25219--25273
17
3.2
16
80
14
58
36
18
21
23
1.95
28690--28737
25
1.9
25
95
0
87
29
14
0
56
1.39
31396--31447
23
2.3
23
93
0
86
40
28
11
19
1.86
32029--32318
108
2.7
109
90
4
435
49
2
11
37
1.50
33967--34000
6
5.7
6
86
13
52
50
0
35
14
1.44
34157--34192
18
2.0
18
88
0
54
41
50
2
5
1.40
34178--34246
33
2.1
33
88
0
102
31
44
4
18
1.69
34232--34416
30
6.5
29
72
15
122
29
54
7
8
1.57
34257--36361
27
73.8
27
64
16
225
32
48
6
12
1.66
34230--34391
87
1.9
87
89
2
254
29
54
8
7
1.58
34257--34413
57
2.8
57
82
5
176
30
55
7
6
1.53
34347--34588
132
1.8
132
89
3
380
32
47
7
11
1.69
34478--36030
87
17.8
86
71
14
660
33
47
6
12
1.67
34566--36471
60
33.1
60
66
15
346
33
47
6
12
1.67
34716--36299
27
55.6
27
64
16
324
33
47
6
12
1.66
34574--36334
147
12.3
147
76
10
1303
33
47
6
12
1.67
35432--35628
33
6.3
33
72
12
150
34
48
4
12
1.62
34859--36389
114
13.4
117
67
16
538
33
48
6
12
1.67
35700--35799
30
3.6
29
72
15
102
34
49
6
11
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36013--36171
87
1.8
87
88
0
246
33
50
5
10
1.60
36046--36299
129
1.9
130
86
5
361
33
50
5
10
1.60
36178--36389
30
7.4
29
64
17
93
32
50
5
12
1.62
36178--36506
87
3.8
86
86
5
382
31
48
6
13
1.68

Tables:   1

The End!