Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012422.1 Corchorus capsularis cultivar CVL-1 contig12443, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80847

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107--218
32
3.5
32
95
1
179
12
26
44
16
1.83
4355--4385
12
2.7
11
90
9
53
77
0
0
22
0.77
7944--7978
2
17.5
2
87
0
52
45
2
2
48
1.32
8675--8739
29
2.2
29
83
5
87
41
12
9
36
1.75
8645--8737
27
3.4
26
74
15
80
36
13
10
38
1.80
14655--14697
2
21.5
2
100
0
86
51
48
0
0
1.00
25293--25334
2
21.0
2
100
0
84
50
0
0
50
1.00
28171--28219
3
16.3
3
87
8
73
30
0
4
65
1.11
28097--28420
174
1.8
175
80
12
385
33
9
11
45
1.73
34595--34624
2
15.0
2
92
0
51
0
46
0
53
1.00
36315--36379
21
3.6
19
66
30
52
0
26
3
70
1.01
36310--36366
19
2.9
21
75
17
59
0
26
1
71
0.95
36320--36358
16
2.6
15
88
8
53
0
28
2
69
1.02
37582--37626
23
1.9
24
81
4
56
71
0
15
13
1.15
37933--37982
12
4.2
12
84
0
64
2
18
34
46
1.60
43914--43943
2
15.0
2
100
0
60
50
0
0
50
1.00
46644--46684
21
2.0
21
85
0
55
34
19
2
43
1.64
49267--49302
2
18.0
2
100
0
72
50
0
0
50
1.00
50387--50428
18
2.3
18
91
0
66
40
11
23
23
1.88
50395--50430
18
2.0
18
100
0
72
38
5
22
33
1.77
56485--56535
2
27.0
2
84
11
72
52
0
1
45
1.12
64056--64093
11
3.5
11
85
10
51
57
2
0
39
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64681--64707
2
13.5
2
100
0
54
51
0
0
48
1.00
75037--76005
483
2.0
482
96
1
1807
32
16
11
39
1.85
80641--80678
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!