Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012427.1 Corchorus capsularis cultivar CVL-1 contig12448, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24935
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:22641 original size:2 final size:2

Alignment explanation


    Indices: 22634--22666  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

      22624 TTTATTTTAT

                                                             
      22634 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

      22667 TCAATGTTTG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:24314 original size:5 final size:5

Alignment explanation


    Indices: 24304--24333  Score: 60
    Period size: 5  Copynumber: 6.0  Consensus size: 5

      24294 ATGCTACTTG

                                               
      24304 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
          1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT

      24334 TTGAAATCTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   25  1.00

ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80


Consensus pattern (5 bp):   
ATTTT

Found at i:24908 original size:2 final size:2

Alignment explanation


    Indices: 24901--24935  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

      24891 GCTCATTACA

                                                                
      24901 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.