Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001243.1 Corchorus capsularis cultivar CVL-1 contig01243, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 765

Length: 1275
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34


Found at i:651 original size:39 final size:39

Alignment explanation


    Indices: 608--684  Score: 145
    Period size: 39  Copynumber: 2.0  Consensus size: 39

        598 ATTCAGTATT

                                                   
        608 TTGCTCTCTTTATTTTGTGCCATATCAGGGCAACTTGGG
          1 TTGCTCTCTTTATTTTGTGCCATATCAGGGCAACTTGGG

                                *                 
        647 TTGCTCTCTTTATTTTGTGCTATATCAGGGCAACTTGG
          1 TTGCTCTCTTTATTTTGTGCCATATCAGGGCAACTTGG

        685 TTTCCTCGAT


Statistics
Matches: 37,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  39   37  1.00

ACGTcount: A:0.16, C:0.19, G:0.22, T:0.43


Consensus pattern (39 bp):   
TTGCTCTCTTTATTTTGTGCCATATCAGGGCAACTTGGG
Done.