Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012431.1 Corchorus capsularis cultivar CVL-1 contig12452, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59297

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1682
322
5.3
320
87
4
2391
35
16
14
34
1.89
2000--2042
19
2.3
19
88
4
61
62
6
9
20
1.48
5786--5825
4
10.0
4
100
0
80
75
0
0
25
0.81
7645--7708
31
2.1
31
96
0
119
60
7
9
21
1.52
10450--10497
22
2.2
22
100
0
96
52
14
18
14
1.75
21794--21875
26
3.2
26
63
27
66
31
10
9
47
1.71
21786--21894
51
2.1
52
96
3
211
30
11
9
49
1.69
22455--22518
32
2.0
32
96
0
119
23
18
14
43
1.86
31218--31270
17
3.1
17
86
0
70
24
20
18
35
1.95
33634--33708
30
2.5
31
82
6
91
28
28
17
26
1.98
34705--34785
29
2.7
29
80
14
85
24
24
18
32
1.97
36272--36309
11
3.5
11
85
10
51
57
2
0
39
1.12
39781--39826
22
2.1
21
84
4
56
17
8
13
60
1.56
47599--47634
2
17.5
2
88
5
54
47
0
2
50
1.15
48808--48881
29
2.5
29
80
4
85
29
27
25
17
1.97
50990--51075
43
2.0
43
100
0
172
32
11
16
39
1.84

Tables:   1

The End!