Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012434.1 Corchorus capsularis cultivar CVL-1 contig12455, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99642

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--44
2
22.0
2
100
0
88
0
50
0
50
1.00
2250--2314
30
2.1
32
88
5
98
26
3
12
58
1.49
13774--13891
58
2.0
60
85
6
161
30
25
5
38
1.80
24909--26910
334
6.0
329
81
6
2135
37
16
14
32
1.88
24909--26895
662
3.0
658
86
3
2493
37
16
13
31
1.88
24909--26903
668
3.0
661
85
4
2668
37
16
14
31
1.88
26918--32558
338
17.0
333
80
7
5774
36
16
14
32
1.89
26918--32442
670
8.3
661
85
5
5924
36
16
14
31
1.89
32909--32952
20
2.3
19
88
4
61
63
6
9
20
1.46
41933--41961
14
2.1
14
100
0
58
44
20
13
20
1.85
50307--50338
2
16.0
2
100
0
64
50
0
0
50
1.00
58216--58275
30
2.0
31
83
9
79
31
25
13
30
1.93
59039--59105
31
2.2
31
86
7
93
26
17
25
29
1.98
59162--59197
18
2.0
18
88
0
54
52
13
13
19
1.74
76960--77000
20
2.0
20
100
0
82
19
9
39
31
1.84
78325--78376
26
2.0
26
88
7
79
53
23
9
13
1.68
78331--78386
26
2.2
26
80
6
60
60
21
5
12
1.51
83102--83129
14
2.0
14
100
0
56
35
0
42
21
1.53
83293--83324
13
2.6
12
90
9
55
90
0
0
9
0.45
97951--97989
7
5.7
7
84
6
53
2
15
0
82
0.79
98901--98948
25
1.9
25
100
0
96
47
10
4
37
1.57

Tables:   1

The End!